Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PHR2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47590 530 / 0 PHR2 photolyase/blue-light receptor 2 (.1) AT5G24850 211 / 2e-62 CRY3 cryptochrome 3 (.1) AT3G15620 95 / 6e-21 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT4G25290 64 / 2e-10 DNA photolyases;DNA photolyases (.1) AT1G04400 60 / 2e-09 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT4G08920 45 / 0.0001 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G128500 [exp] 723 / 0 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.006G277500 [exp] 198 / 3e-57 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.003G060000 [exp] 96 / 5e-21 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.015G129500 [exp] 69 / 3e-12 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.010G071200 [exp] 59 / 4e-09 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.002G096900 [exp] 51 / 1e-06 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.005G164700 [exp] 49 / 4e-06 AT4G08920 999 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007880 [exp] 555 / 0 AT2G47590 521 / 0.0 photolyase/blue-light receptor 2 (.1) Lus10020878 [exp] 204 / 6e-60 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10022095 [exp] 82 / 2e-16 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10031716 [exp] 69 / 3e-12 AT4G25290 700 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10031137 [exp] 69 / 4e-12 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10033499 [exp] 64 / 9e-11 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10000521 [exp] 57 / 1e-08 AT3G15620 295 / 7e-98 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10011822 [exp] 54 / 3e-07 AT1G04400 781 / 0.0 cryptochrome 2 (.1.2) Lus10021188 [exp] 53 / 4e-07 AT1G04400 747 / 0.0 cryptochrome 2 (.1.2) Lus10033446 [exp] 51 / 2e-06 AT4G08920 1009 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00875 [poplar] [flax] DNA_photolyase DNA photolyase CL0039 [poplar] [flax] PF03441 [poplar] [flax] FAD_binding_7 FAD binding domain of DNA photolyase
Representative CDS sequence Show only first row Show all	>Potri.002G204000.3 pacid=42778341 polypeptide=Potri.002G204000.3.p locus=Potri.002G204000 ID=Potri.002G204000.3.v4.1 annot-version=v4.1 ATGGATCCCCATCTTCAAAACCTGGAAACCACCACCCCAGAATCCACTTCAGAAGACCAAAACCAACAGCAGCAACTTGCCATTGTCTCTTCATCCCCAT TTGCCACTGCTTCTCTTTCTCTTTCTCTTCCCACAATCTTACCCACCCATTTTTTCACTCAACCCAAAATCTCTAGTCTTTTTTCCTCTCCTCCAACCAA GGCTAAGATACCTACTCAAGCCACCTCTCTAACTCACCTCTCTCTCACTTCTTCCACTTCTTCTCCCAAACTCTCCTTCAAGTCTACCATCTCTGCCAAC CCTCTCCATACTCCTCTCACTCTTGGGCCGCGCCGCCCCTCCGACCCCTCCAATGCTGCCGGAACTCGTCGAGCTTGCATCGTTTGGTTTCGCAATGACT TGCGTGTCCATGACAATGAGTGCCTCAACTCTGCCAACAATGACTCTATGTCTGTTTTGCCTGTTTATTGTTTTGACCCGAGAGACTATGGGAAATCTTC CTCTGGATTTGACAAGACTGGGCCTTATCGTGCCAATTTCTTGATTGAATCGGTCTCTGACCTCCGCAAGAACTTGCAGGCTAGAGGGTCTGATCTTGTG GTGAGAGTTGGGAGACCAGAGACTGTATTGGTTGAATTGGCTAAGGCTATTGGAGCTGATGCTGTGTATGCACATAGAGAGGTGTCTCATGATGAGGTTA AGGCGGAGGAGAAGATCGAAGAGCTCATGAAAGATGAGGGAGTTGAGGTTAAGTACTTTTGGGGAAGTACCTTGTATCATTTGGATGATTTGCCTTTCAA GTTGGAAGATATGCCATCGAATTATGGTGGGTTCAAGGAGAAAGTGCAGGGTTTGGAGATTAGGAAGACCATTGAGACTTTGGATCAATTAAAGGGTTTG CCTTCAAGAGGAGATGTGGAGCCTGGGGATATCCCAAATTTATTGGATTTGGGTCTCAACCCAGCTCAGGATGGAAAGGCAGCTGCAAATGCTTCTATGG TGGGAGGCGAGACTGAAGCACTACAGAGGCTCAACAAATTTGCAGCTGAGTGTCAAGCACAACCTCCCAAGGGTGGCAGCCATGAAAGCATATACGGTGC AAACTTCTCCTGCAAAATTTCTCCATGGCTCACAATGGGATGCGTCTCTGCCCGTTCCATGTTTGATGAGCTTAAAAAGACTGCTACAAGAACAATTTCT GCTGCCTCAAATCACAATAGTGGTGGTAGCAGTTCACCTGGAGCTGGAATGAACTGGTTGATGTTTGAGTTGATGTGGCGGGATTTCTTCAGATTCATTA CCAAGAAGTACAGTGCTCCAAGGAAACAGCTGGAAGCAACTCCAGCCACAGCTTGTACGGGTGCATTTGCTTAG
AA sequence Show only first row Show all	>Potri.002G204000.3 pacid=42778341 polypeptide=Potri.002G204000.3.p locus=Potri.002G204000 ID=Potri.002G204000.3.v4.1 annot-version=v4.1 MDPHLQNLETTTPESTSEDQNQQQQLAIVSSSPFATASLSLSLPTILPTHFFTQPKISSLFSSPPTKAKIPTQATSLTHLSLTSSTSSPKLSFKSTISAN PLHTPLTLGPRRPSDPSNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESVSDLRKNLQARGSDLV VRVGRPETVLVELAKAIGADAVYAHREVSHDEVKAEEKIEELMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQLKGL PSRGDVEPGDIPNLLDLGLNPAQDGKAAANASMVGGETEALQRLNKFAAECQAQPPKGGSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTIS AASNHNSGGSSSPGAGMNWLMFELMWRDFFRFITKKYSAPRKQLEATPATACTGAFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47590		PHR2	photolyase/blue-light receptor...		Potri.002G204000 [exp]	0	1	PHR2.3
AT1G71500			Rieske (2Fe-2S) domain-contain...		Potri.019G073900 [exp]	10.63	0.9564
AT2G34860		EDA3	embryo sac development arrest ...		Potri.001G009800 [exp]	17.43	0.9528
AT5G42070			unknown protein		Potri.001G089500 [exp]	20.29	0.9504
AT5G35100			Cyclophilin-like peptidyl-prol...		Potri.006G189900 [exp]	20.49	0.9525
AT1G26220			Acyl-CoA N-acyltransferases (N...		Potri.008G113600 [exp]	21.90	0.9500
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Potri.001G151300 [exp]	26.03	0.9487	Lil3_3,Pt-LIL3.1
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Potri.008G181900 [exp]	30.59	0.9458	PSBY.1
AT2G24090			Ribosomal protein L35 (.1)		Potri.018G102700 [exp]	34.19	0.9460
AT5G54600			Translation protein SH3-like f...		Potri.001G415400 [exp]	34.87	0.9458
AT5G08050			Protein of unknown function (D...		Potri.015G058600 [exp]	38.10	0.9364

Compare expression of checked genes

Potri.002G204000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.