Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47630 494 / 1e-176 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 489 / 5e-175 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 355 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39420 353 / 5e-122 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 348 / 1e-119 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 299 / 1e-100 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 274 / 2e-90 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G11090 264 / 1e-86 alpha/beta-Hydrolases superfamily protein (.1) AT1G77420 246 / 7e-79 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G129000 [exp] 617 / 0 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 354 / 3e-122 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 343 / 6e-118 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 284 / 1e-93 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G046500 [exp] 254 / 4e-83 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 234 / 3e-74 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 203 / 7e-63 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.001G175000 [exp] 202 / 2e-62 AT1G52760 554 / 0.0 lysophospholipase 2 (.1) Potri.010G222300 [exp] 191 / 4e-58 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007877 [exp] 516 / 0 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10030366 [exp] 419 / 6e-148 AT3G62860 400 / 2e-140 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 347 / 1e-119 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 343 / 2e-113 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 276 / 3e-91 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10011212 [exp] 262 / 4e-86 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10009169 [exp] 259 / 8e-85 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 258 / 1e-84 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 258 / 3e-83 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10034331 [exp] 243 / 2e-77 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.002G204200.1 pacid=42777441 polypeptide=Potri.002G204200.1.p locus=Potri.002G204200 ID=Potri.002G204200.1.v4.1 annot-version=v4.1 ATGGAGATGGAGTTTGAATATCAGGAGGGGTATATAAGAAGTTCAAGAGGAGTGCAGCTCTTTACATGTAGATGGTTGCCTTCGGGTTCCTCTTCTCCAA GAGCACTTGTTTTCCTCTGTCATGGATATGGCATGGAGTGCAGTGGTTCCATGAGAGAATGTGGAATCAGGCTAGCACGTGCTGGATATGCTGTGTTTGG GATTGACTACGAGGGGCATGGACGGTCCGCTGGTTCCCGTTGTTACATCAAGAAGTTTGAAAATATAGTGAACGACTGCCAAGATTTTTTCAAGTCAGTT TGTGCTGAGAAAGATTACAGGTACAAGGGCAGGTTCCTGTATGGAGAGTCCATGGGAGGGGCAGTTGCCCTGTTACTCCACCAGAAGGAACCTCTGTTCT ACCATGGTGCCGTTCTTGTTGCTCCTATGTGCAAGATATCGGAGAAATTGAAGCCACATCCGGTAGTTGTTAATATATTGACTGGTTTGGTAGACCTTAT ACCGAAGTGGAAGATTGTCCCTACGAAAGATATCATTGACTCTGCCTTCAAGGACCCTCTTAAGAGAGAAGAGATAAGGAACAACAAGCTGATATACCAG GACAAGCCCAGGCTTAAAACAGCCCTGGAAATGCTCAGAACTAGCATGAGGGTCGAGGAAAGTTTAAAGCAGGTGACACTACCATTCGTAGTGTTGCATG GCGACGCAGATACAGTGACAGACCCTGAAGTAAGCAAGGCCTTGTACGACCGAGCAAGCAGCGAAGACAAGACCATGAAAATGTACCCCGGAATGTGGCA TGCTTTGACAGTGGGAGAGACTGATGAAAACGTAGGAGTCGTTTTTGCCGATATCATAGCTTGGCTTGACGAGCACACTGCCGAGGGAACTCTTCTTGTC GAACCATTGCATGAGACTTTCCATGTTGGCATAGAGAAACTTCCATCTCCTCCACCTACGACTCAGAAACAATCACATCGTTTCTATCTTTGTGGATTTA AGGAACCACGCACGCTTCATTCAGCTATGTAG
AA sequence Show only first row Show all	>Potri.002G204200.1 pacid=42777441 polypeptide=Potri.002G204200.1.p locus=Potri.002G204200 ID=Potri.002G204200.1.v4.1 annot-version=v4.1 MEMEFEYQEGYIRSSRGVQLFTCRWLPSGSSSPRALVFLCHGYGMECSGSMRECGIRLARAGYAVFGIDYEGHGRSAGSRCYIKKFENIVNDCQDFFKSV CAEKDYRYKGRFLYGESMGGAVALLLHQKEPLFYHGAVLVAPMCKISEKLKPHPVVVNILTGLVDLIPKWKIVPTKDIIDSAFKDPLKREEIRNNKLIYQ DKPRLKTALEMLRTSMRVEESLKQVTLPFVVLHGDADTVTDPEVSKALYDRASSEDKTMKMYPGMWHALTVGETDENVGVVFADIIAWLDEHTAEGTLLV EPLHETFHVGIEKLPSPPPTTQKQSHRFYLCGFKEPRTLHSAM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47630			alpha/beta-Hydrolases superfam...		Potri.002G204200 [exp]	0	1
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.002G019900 [exp]	1.41	0.9760	Pt-CLV1.1
AT1G04500			CCT motif family protein (.1)		Potri.008G171500 [exp]	3.00	0.9630
AT5G20635		AGG3	Arabidopsis G protein gamma su...		Potri.006G141100 [exp]	6.48	0.9469
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.002G035200 [exp]	6.63	0.9538
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.010G144700 [exp]	8.06	0.9522
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Potri.005G227900 [exp]	8.36	0.9438
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Potri.006G117700 [exp]	9.00	0.9338
AT1G54740			Protein of unknown function (D...		Potri.008G019600 [exp]	9.05	0.8881
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	12.64	0.9419	Pt-ATML1.1
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.015G005900 [exp]	12.64	0.9316

Compare expression of checked genes

Potri.002G204200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.