Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UXS2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62830 724 / 0 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 714 / 0 UXS4 UDP-xylose synthase 4 (.1.2) AT3G53520 614 / 0 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G28760 478 / 4e-169 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 477 / 1e-168 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 473 / 6e-167 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT2G27860 118 / 2e-29 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT5G28840 116 / 1e-28 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT1G08200 115 / 2e-28 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT1G53500 111 / 4e-26 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G129200 [exp] 838 / 0 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 622 / 0 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 611 / 0 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.010G207200 [exp] 483 / 4e-171 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 481 / 3e-170 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 478 / 5e-169 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.005G053000 [exp] 119 / 9e-30 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.013G040600 [exp] 114 / 4e-28 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.004G189900 [exp] 112 / 3e-27 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030368 [exp] 738 / 0 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 709 / 0 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10006510 [exp] 615 / 0 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 610 / 0 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10025293 [exp] 592 / 0 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10015038 [exp] 591 / 0 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10037499 [exp] 535 / 0 AT3G62830 551 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10005450 [exp] 483 / 6e-171 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005155 [exp] 482 / 2e-170 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10001707 [exp] 481 / 5e-170 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.002G204400.2 pacid=42777982 polypeptide=Potri.002G204400.2.p locus=Potri.002G204400 ID=Potri.002G204400.2.v4.1 annot-version=v4.1 ATGGGATCCTCGGAGCTGATTTTTAGAGGTCATGACGAGACTCAACCAGCATCTGATGCTTACTCGCCTAAACCACCGAAGCCATGGCTCGCCGTCACCC GACCCATTCGTTACCTGCTTCTTGAGCAGCGACTCGTCTTTATCCTCGTCGGCATTGCTATTGCCACTCTTTTCTTCACTCTCCTGCCTTCTTCCTCTTC CTCATCCCCTTACGAACACGATCCAATCCCAAACACTTTCTCTCACTTCTCTCATGAGTTAACAACCCCTATGCGTTACAAATACTACGAGCCCCTTCGG GTAGGACTCCAATCAGCCAATTCCGGCGGCAAGATTCCGCTGGGACTCAAGAGTAAAAGTCTCCGAATCGTTGTTACAGGTGGGGCTGGGTTTGTTGGGT CTCACTTAGTGGACCGTCTGATCGCTAGAGGAGATAGCGTGATCGTGGTGGATAATTTTTTCACGGGAAGGAAAGAGAACGTGATGCACCATTTTAAGAA CCCGAGATTTGAGTTAATCAGACACGATGTTGTCGAGCCACTGTTGTTAGAAGTGGACCAGATCTACCATCTTGCTTGTCCTGCATCGCCTGTTCATTAC AAGCACAACCCGGTCAAGACAATAAAGACTAACGTCGTGGGCACATTGAATATGTTGGGTTTGGCTAAGAGAGTTGGTGCTAGGTTTTTGCTTACCAGTA CCAGCGAGGTTTATGGTGATCCTTTACAGCATCCTCAGGTCGAGACGTACTGGGGCAACGTTAATCCCATCGGTGTCAGGAGTTGTTACGATGAAGGAAA GAGAACTGCTGAGACATTGACTATGGACTATCACCGAGGTGCTGGTGTAGAGGTTAGGATTGCTAGAATTTTCAATACTTATGGACCTCGAATGTGCATA GATGATGGCCGTGTTGTTAGTAATTTTGTTGCTCAGGCACTAAGGAAGGAGCCTATGACTGTTTATGGTGATGGGAAACAGACAAGGAGTTTTCAATTTG TTTCTGATTTGGTTGAGGGTCTGATGCGCCTTATGGAAGGAGAACATGTAGGGCCTTTCAATCTTGGAAATCCGGGTGAATTCACCATGCTCGAGCTTGC CCAGGTGGTCCAGGAAACCATTGACCCAAATGCAAGGATAGAATTCAGGCCTAACACAGAAGATGACCCACACAAGAGAAAACCTGATATTACGAAGGCT AAAGATCTCCTTGGCTGGGAACCTAAGATATCCCTTCGTCAAGGTCTGCCAATGATGGTCTCGGACTTCAGGCAACGTGTCTTCGGTGACCACAAGGAAG AAGGCACGACCTCCACCATGTCAACATCTTAA
AA sequence Show only first row Show all	>Potri.002G204400.2 pacid=42777982 polypeptide=Potri.002G204400.2.p locus=Potri.002G204400 ID=Potri.002G204400.2.v4.1 annot-version=v4.1 MGSSELIFRGHDETQPASDAYSPKPPKPWLAVTRPIRYLLLEQRLVFILVGIAIATLFFTLLPSSSSSSPYEHDPIPNTFSHFSHELTTPMRYKYYEPLR VGLQSANSGGKIPLGLKSKSLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFKNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHY KHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI DDGRVVSNFVAQALRKEPMTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDITKA KDLLGWEPKISLRQGLPMMVSDFRQRVFGDHKEEGTTSTMSTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Potri.002G204400 [exp]	0	1	Pt-UXS2.1
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Potri.003G074600 [exp]	19.39	0.8717	QRT3.2
AT4G13700		ATPAP23, PAP23	purple acid phosphatase 23 (.1...		Potri.003G176000 [exp]	20.09	0.8787
AT5G01010			unknown protein		Potri.016G143700 [exp]	24.73	0.8691
AT1G29240			Protein of unknown function (D...		Potri.004G057800 [exp]	29.12	0.8602
AT1G64650			Major facilitator superfamily ...		Potri.003G145600 [exp]	29.39	0.8731
AT5G42570			B-cell receptor-associated 31-...		Potri.004G007900 [exp]	30.46	0.8114
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.018G063500 [exp]	41.07	0.8684	PtrSuSY1,Pt-SUS1.2
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	43.81	0.8677
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.005G146800 [exp]	45.38	0.8553
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Potri.008G132500 [exp]	47.69	0.8627

Compare expression of checked genes

Potri.002G204400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.