Plant FIBer expression Database

Potri.002G204700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02425 153 / 2e-45 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G129500
[exp]
361 / 1e-126 AT4G02425 189 / 5e-59 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030370
[exp]
0 / 1 AT4G02425 142 / 2e-43 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G204700.1 pacid=42778914 polypeptide=Potri.002G204700.1.p locus=Potri.002G204700 ID=Potri.002G204700.1.v4.1 annot-version=v4.1
ATGTCTCACAATTCTCGGCAGTCCTTAGACTCATGCACTCTCCAGCTCCATTCATGGAGACCTTTTCTCGATTCCGATCCCACCACCAGCTATAAACCCC
ACGCCTCTTCCCCCACTCTCACTAAACGCCCTTGCCTTTCTGATCGCTCCACTTCTTTCCCTTCCAACGTCGATTCCATCGACCTTTCCAAGCTCACTCT
CCTTGAAGATGACCATAACAACACCAACAATAAACCCATCCCCGCTGTTACCAGCAGACCCTACAAGCGAGGCACCTTACGCCTTATCCAGCGCAAGAGG
CGGCGGAGAGGATCCCGTTCTGTGTCCGGCCGGAGCTCCGATAGAAGTGGGACCCGGCGGTGCTGCTCGGTTGGCGCGGCGTCTGCGGCTCATGCGACTT
GCTCGGATTTCCATGTGGCGGTGGGGACGGACTCGAGTGGGGAGCTGTTTGTGAATGGGGACGCGAATTGGGCGTCGGATGTCAGTCAAGCAAAGAATTC
GGTAAAAGGAAGGGAGGAGAAAGAGAATTTGTTGGGAGTGGGTAATGTTATTGGGAATTTGGATAGTGAGTCTGGATATGGGAGTGAGCCTGGGTATAGA
GGGGATGCTGAGGTTGGTTACGGAGATGAGGTTGATGAGGAAGAGGATGATGCCAGGTTGTTGTTTTGGGGACACCACTTTCAAGATTCTAAGATGGAAA
TGGTTGGAGAGAACACATTTGATTCAAAAACCCATCACAGATGTCGTCGCAAGAAGCATGATTGTAGTAGAATGGTTGATCCTGTGAGATAA
AA sequence
>Potri.002G204700.1 pacid=42778914 polypeptide=Potri.002G204700.1.p locus=Potri.002G204700 ID=Potri.002G204700.1.v4.1 annot-version=v4.1
MSHNSRQSLDSCTLQLHSWRPFLDSDPTTSYKPHASSPTLTKRPCLSDRSTSFPSNVDSIDLSKLTLLEDDHNNTNNKPIPAVTSRPYKRGTLRLIQRKR
RRRGSRSVSGRSSDRSGTRRCCSVGAASAAHATCSDFHVAVGTDSSGELFVNGDANWASDVSQAKNSVKGREEKENLLGVGNVIGNLDSESGYGSEPGYR
GDAEVGYGDEVDEEEDDARLLFWGHHFQDSKMEMVGENTFDSKTHHRCRRKKHDCSRMVDPVR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02425 unknown protein Potri.002G204700
[exp]
0 1
AT5G08780 winged-helix DNA-binding trans... Potri.005G069700
[exp]
1.41 0.7536
AT3G47630 unknown protein Potri.001G076200
[exp]
18.00 0.7530
AT2G21630 Sec23/Sec24 protein transport ... Potri.002G238500
[exp]
22.18 0.7250
AT2G13620 ATCHX15 CATION/H+ EXCHANGER 15, cation... Potri.010G189100
[exp]
22.49 0.6933
Potri.016G125901
[exp]
27.42 0.7163
AT5G19300 unknown protein Potri.010G091400
[exp]
37.81 0.7266
AT2G33820 ATMBAC1 Mitochondrial substrate carrie... Potri.004G046801
[exp]
44.49 0.6679
AT1G18450 ATARP4 actin-related protein 4 (.1) Potri.015G053100
[exp]
52.62 0.6610 Pt-ARP4.1
AT2G34260 WDR55 human WDR55 \(WD40 repeat\) ho... Potri.004G095000
[exp]
85.70 0.6628
AT5G65420 CYCD4;1 CYCLIN D4;1 (.1.2.3) Potri.005G157800
[exp]
90.11 0.6841

Potri.002G204700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.