Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61770 491 / 3e-176 PPAN PETER PAN-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G129700 [exp] 569 / 0 AT5G61770 521 / 0.0 PETER PAN-like protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002672 [exp] 502 / 2e-180 AT5G61770 492 / 4e-176 PETER PAN-like protein (.1.2.3) Lus10030190 [exp] 500 / 7e-179 AT5G61770 494 / 5e-176 PETER PAN-like protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [poplar] [flax] IIaaRS-ABD PF04427 [poplar] [flax] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Potri.002G204900.1 pacid=42779586 polypeptide=Potri.002G204900.1.p locus=Potri.002G204900 ID=Potri.002G204900.1.v4.1 annot-version=v4.1 ATGGCTCGTATACCAAATAAAAAGAGGAAGATGTTTGTGAAGCCAATAGTGAAAAAGAAGCAGGCCAATGTGGATCATATCACTGGTGATAAGATACCTA AGAGCTTTGTTTTTGCGAGAGGAAAGTTGCCTGGCTCTCTCAGGCAACTTCAGATGGACTTGAGGAAGTTGATGCTTCCCTACACTGCTCTCAAGCTTAA GGAGAAGAAACGGAATAATCTCAAAGACTTCTTGAATGTTGCTGGGCCTATGGGTGTTTCTCATTTCCTTATATTGTCAAAAACTGAAACTGCACCATAT TTGAGGGTTGCAAGGACCCCACAAGGCCCAACTCTTACGTTTAAGATACATGAGTATTCATTGGCAGCTGATGTTGCTCAATCTCAATTGCACCCTAGAT GTCCGCAGGATCTTTTCAAAAATGCCCCTTTGATTGTTCTTTCTGGTTTTGGGTCTGGAGAACAACATTTAAAACTCACAACTGTAATGTTTCAGAAAAT CTTTCCAGCCATTGATATTAATACTGTCAAACTTTCTTCTTGCCAGAGAATAGTGTTACTTAATTACAACAAAGACACAAAACTTATTGATTTCCGGCAT TATTCCATCAAACTCCAGCCTGTAGGTGTCTCCCGTAGACTCAGAAAGTTTGTGCAGAACCGCCAAGTTCCTGATCTTAGAAATCTCCAAGATGTGAGCG ACTTTGTCACTAAGGCTGGTTATGGATCAGAAAGTGAAGGAGATGATGAAGCGGCGACAGTAACTTTGGCTAATGATCTTGGTAGAGTTAATAAAGCTTC TACAAAAAGCGCTGTGAAGCTCCAGGAGATTGGACCCAGAATGGTTCTTCAACTTGTTAAGATTGAGGAAGGATTATGTTCTGGTGATGTCATCTTCAGT GAATATGGAACTGCAAGTGAGCAAAGGCAGGAAACGAATCAGAACAATGAGGAAGATGCTGGAGATGATGAAGATAGCGACTAG
AA sequence Show only first row Show all	>Potri.002G204900.1 pacid=42779586 polypeptide=Potri.002G204900.1.p locus=Potri.002G204900 ID=Potri.002G204900.1.v4.1 annot-version=v4.1 MARIPNKKRKMFVKPIVKKKQANVDHITGDKIPKSFVFARGKLPGSLRQLQMDLRKLMLPYTALKLKEKKRNNLKDFLNVAGPMGVSHFLILSKTETAPY LRVARTPQGPTLTFKIHEYSLAADVAQSQLHPRCPQDLFKNAPLIVLSGFGSGEQHLKLTTVMFQKIFPAIDINTVKLSSCQRIVLLNYNKDTKLIDFRH YSIKLQPVGVSRRLRKFVQNRQVPDLRNLQDVSDFVTKAGYGSESEGDDEAATVTLANDLGRVNKASTKSAVKLQEIGPRMVLQLVKIEEGLCSGDVIFS EYGTASEQRQETNQNNEEDAGDDEDSD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.002G204900 [exp]	0	1
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.003G201100 [exp]	1.00	0.9214	Pt-IMP4.2
AT3G18760			Translation elongation factor...		Potri.018G113200 [exp]	1.41	0.9083
AT5G16930			AAA-type ATPase family protein...		Potri.011G143300 [exp]	3.87	0.8829
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.014G135600 [exp]	5.29	0.8861
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Potri.018G140100 [exp]	5.47	0.8824
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.014G129700 [exp]	5.65	0.8687
AT4G36580			AAA-type ATPase family protein...		Potri.007G023900 [exp]	6.24	0.8889
AT1G20370			Pseudouridine synthase family ...		Potri.005G247000 [exp]	6.63	0.8451
AT4G37090			unknown protein		Potri.007G034600 [exp]	7.93	0.8731
AT5G02050			Mitochondrial glycoprotein fam...		Potri.006G090700 [exp]	8.71	0.8464	Pt-SDH4.3

Compare expression of checked genes

Potri.002G204900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.