Plant FIBer expression Database

Potri.002G205150 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02440 371 / 7e-129 EID1 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
AT5G15440 51 / 3e-07 EDL1 EID1-like 1 (.1)
AT5G39360 44 / 0.0001 EDL2 EID1-like 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G130000
[exp]
515 / 0 AT4G02440 370 / 2e-128 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Potri.017G090300
[exp]
51 / 3e-07 AT5G39360 415 / 1e-148 EID1-like 2 (.1)
Potri.004G125000
[exp]
50 / 8e-07 AT5G39360 418 / 4e-150 EID1-like 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030373
[exp]
399 / 1e-139 AT4G02440 407 / 8e-143 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Lus10007870
[exp]
394 / 1e-137 AT4G02440 399 / 9e-140 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Lus10028001
[exp]
53 / 9e-08 AT3G63060 312 / 6e-107 EID1-like 3 (.1)
Lus10025639
[exp]
52 / 2e-07 AT5G39360 429 / 2e-154 EID1-like 2 (.1)
Lus10000659
[exp]
49 / 1e-06 AT3G63060 212 / 1e-68 EID1-like 3 (.1)
Lus10029662
[exp]
49 / 2e-06 AT5G39360 423 / 4e-152 EID1-like 2 (.1)
Lus10018196
[exp]
49 / 2e-06 AT5G39360 364 / 6e-129 EID1-like 2 (.1)
Lus10042699
[exp]
48 / 4e-06 AT5G39360 428 / 4e-154 EID1-like 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Potri.002G205150.1 pacid=42779440 polypeptide=Potri.002G205150.1.p locus=Potri.002G205150 ID=Potri.002G205150.1.v4.1 annot-version=v4.1
ATGACAGAAACCACGGGTTTCTCAAAACTCTCTGACGACGTCGTACTCAACATCTTCTCCAAACTAGAAGACGATCCACGCAACTGGGCCCGCCTCGCTT
GTGTCTGCACCAAATTCTCCTCTCTCATACGCGACATCTGCTGGAAATCCAAATGCAACAAAACCATCCCTTCCGTCGTCTCCGATCTCCTTTCCTCCCC
TGACTCTCCTTTCCCTGGCGCCTGGTCTGCCCTCCACAAGCTTGCCGTCTGCTGCCCTGGCCTCCTCCACGCTGGTGTCTTCCTCGAGCACTCCGATTTC
GGCCTTGAACGCGAGCTCGGCCCCGACGATTATTTCCACAAATCCAAAAACACTCCGTCCCAACAAGCACAGCAAGCGTCTCATTCCGGTTCTAATTTAG
ACAAGCGCGACTCATCCTGGTCCTTATTTGATGATTTATATTACGACACTGTCTACAACGTGTACGAATCACAGGATGCGGTTACCGTTAGTTGTGAAGC
GAAAGAAGAGGTAATCGGTGGTAATGATGATAAAAGTGTCGATATCTTCGTTAAGGCCCGCGGCATCTCTTCTGTTGGCAAGAGAAGGAAGATTTGTAGA
TCTTTGAGTTCTCATTTGGCATCTGGTGTTTGGAATTTGAGCAGAGAGCAAGGGAACAAGTTACTAGCAAGTCGGTTTCGAGGGGATTGTTTGTACATCT
GTGACTGGCCTGGTTGTGCTCACATCACAGAGAAGCGGAGTTATATGCTGTTTAGAGGGATTTTTAAGAATTTTAAGAAATCGAGGGTCTGGAGGACGAT
ACATGATGGGGATAGGAGCAAGATTGATTTGAGCTGTGCGTTTTGCGGGTGTCAGGAGACTTGGGATTTGAATTCTGCTTTTTGTTTGAAGAGAGGTTTT
GGGTATCATGATGATGGTGAACCTGTTGTTCGAGCTTATGTCTGTGAAAATGGGCATGTCTCCGGTGCTTGGACTGATTGGCCATTGTACACTTGA
AA sequence
>Potri.002G205150.1 pacid=42779440 polypeptide=Potri.002G205150.1.p locus=Potri.002G205150 ID=Potri.002G205150.1.v4.1 annot-version=v4.1
MTETTGFSKLSDDVVLNIFSKLEDDPRNWARLACVCTKFSSLIRDICWKSKCNKTIPSVVSDLLSSPDSPFPGAWSALHKLAVCCPGLLHAGVFLEHSDF
GLERELGPDDYFHKSKNTPSQQAQQASHSGSNLDKRDSSWSLFDDLYYDTVYNVYESQDAVTVSCEAKEEVIGGNDDKSVDIFVKARGISSVGKRRKICR
SLSSHLASGVWNLSREQGNKLLASRFRGDCLYICDWPGCAHITEKRSYMLFRGIFKNFKKSRVWRTIHDGDRSKIDLSCAFCGCQETWDLNSAFCLKRGF
GYHDDGEPVVRAYVCENGHVSGAWTDWPLYT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02440 EID1 EMPFINDLICHER IM DUNKELROTEN L... Potri.002G205150
[exp]
0 1
AT5G43990 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-dom... Potri.002G257400
[exp]
5.29 0.8525
AT1G19010 unknown protein Potri.017G074300
[exp]
7.14 0.8561
AT1G20950 Phosphofructokinase family pro... Potri.010G106950
[exp]
10.77 0.8664
AT5G54470 CO B-box type zinc finger family ... Potri.011G125400
[exp]
19.07 0.8225
AT5G06900 CYP93D1 "cytochrome P450, family 93, s... Potri.016G049900
[exp]
20.49 0.8457
AT2G06000 Pentatricopeptide repeat (PPR)... Potri.006G141800
[exp]
22.64 0.8043
AT1G78955 CAMS1 camelliol C synthase 1 (.1) Potri.011G085000
[exp]
25.49 0.8334 LCOSC2.5
AT5G35910 Polynucleotidyl transferase, r... Potri.013G062800
[exp]
26.07 0.8136
AT3G47570 Leucine-rich repeat protein ki... Potri.010G228300
[exp]
27.34 0.8278
AT1G13245 RTFL17, DVL4 DEVIL 4, ROTUNDIFOLIA like 17 ... Potri.010G129600
[exp]
28.28 0.8377

Potri.002G205150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.