Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02860 437 / 5e-155 BAH1, NLA nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT2G38920 248 / 1e-80 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related AT4G28270 47 / 3e-06 ATRMA2 RING membrane-anchor 2 (.1) AT3G27330 45 / 7e-05 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G18660 42 / 0.0005 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT4G27470 41 / 0.0005 ATRMA3 RING membrane-anchor 3 (.1) AT4G03510 40 / 0.001 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G130300 [exp] 595 / 0 AT1G02860 448 / 3e-159 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.016G064600 [exp] 252 / 5e-82 AT2G38920 414 / 2e-145 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.006G198600 [exp] 251 / 7e-82 AT2G38920 390 / 3e-136 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.016G033700 [exp] 52 / 3e-07 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.001G336832 [exp] 45 / 5e-05 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G058300 [exp] 44 / 0.0001 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.013G132300 [exp] 43 / 0.0002 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2) Potri.012G068100 [exp] 41 / 0.0008 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.001G401600 [exp] 40 / 0.001 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030375 [exp] 413 / 2e-145 AT1G02860 386 / 1e-134 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10012290 [exp] 256 / 1e-83 AT2G38920 392 / 5e-137 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10015986 [exp] 255 / 2e-83 AT2G38920 389 / 1e-135 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10007867 [exp] 220 / 3e-72 AT1G02860 199 / 3e-64 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10007868 [exp] 79 / 5e-18 AT1G02860 87 / 3e-21 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015722 [exp] 44 / 0.0002 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 44 / 0.0002 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10032119 [exp] 43 / 0.0002 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022324 [exp] 43 / 0.0002 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.002G205400.1 pacid=42777890 polypeptide=Potri.002G205400.1.p locus=Potri.002G205400 ID=Potri.002G205400.1.v4.1 annot-version=v4.1 ATGAAGTTTTGCAAGAAATATCAGGAGTACATGCAAGGCAAGGAGAATCGACTACCTGCGGTTGATTTCAAAAAGCTCAAAAAGATATTGAAGAAGTGTA GGGAAGACTTTGAATCGCACCAGGAGCATGATGGCCAATCCTGTCCTCACCATTGTTCTGTGTGCGATGGTACCTTTTTCCCTTCCCTTCTCAAGGAAAT GTCAGCGGTAGTTGGTTGCTTCAATGAACGAGCCCAGAAATTGCTTGAGCTGCACCTGGCTTCTGGCTTTCGAAAATACTTCATGTGGTTCAAAGGCAAG TTGCAAAAAAAACATGTTGCCTTTATTCAAGAAGGCAAGGATCTGGTTACCTATGCACTGATCAATGCTGTTGCAGTTCGAAAAATACTAAAGAAATACG ACAAGATCCATTACTCCAAGCAAGGACAGGCTTTCAAGTCAAAAGCTCAAAGTATGCACATTGAGATCCTCCATTCCCCATGGCTTTGTGAGCTTATGGC TTTTCACATCAATCTAAGGGAGGAAAAGATCAAGTCAAACAAGGTCCCTGCCTTATTCGAGGGGTGCTCACTAAATTTTGACGATGAAAAACCATCACTC TCTTGTGAGCTTTTTGACTCCGTCAAGATTGATATTGATTTGACATGTTCTATATGCTTGGATACAGTATTTGATCCAGTTTCACTAACATGTGGCCATA TCTTCTGCCATATGTGTGCTTGCTCTGCTGCTTCAGTGACCATTGTTGACGGACTGAAGGCAGCAGAGCCTAAAGAAAAATGCCCTCTTTGCCGGAAGAC TGGAGTTTATGAAGGTTCCCTACACTTGGAAGAGCTTAATATTTTATTAAGCAGAAGTTGCCATGAGTATTGGGAGCAGAGACTTCAAACAGAAAGGATA GAGAGGATTCGGCAGGTGAAGGAGCACTGGGAATCTCAGTGTCGGGCATTCGTGGGTGTCTAG
AA sequence Show only first row Show all	>Potri.002G205400.1 pacid=42777890 polypeptide=Potri.002G205400.1.p locus=Potri.002G205400 ID=Potri.002G205400.1.v4.1 annot-version=v4.1 MKFCKKYQEYMQGKENRLPAVDFKKLKKILKKCREDFESHQEHDGQSCPHHCSVCDGTFFPSLLKEMSAVVGCFNERAQKLLELHLASGFRKYFMWFKGK LQKKHVAFIQEGKDLVTYALINAVAVRKILKKYDKIHYSKQGQAFKSKAQSMHIEILHSPWLCELMAFHINLREEKIKSNKVPALFEGCSLNFDDEKPSL SCELFDSVKIDIDLTCSICLDTVFDPVSLTCGHIFCHMCACSAASVTIVDGLKAAEPKEKCPLCRKTGVYEGSLHLEELNILLSRSCHEYWEQRLQTERI ERIRQVKEHWESQCRAFVGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.002G205400 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003350 [exp]	2.00	0.8609
AT5G36930			Disease resistance protein (TI...		Potri.010G231200 [exp]	3.00	0.8080
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.002G032400 [exp]	4.58	0.8440
AT4G06599			ubiquitin family protein (.1)		Potri.004G219300 [exp]	4.69	0.8007
AT2G30000			PHF5-like protein (.1)		Potri.001G277800 [exp]	6.24	0.7972
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.014G179100 [exp]	6.48	0.8347	KAO2.2,KAO2
AT1G55790			Domain of unknown function (DU...		Potri.001G438100 [exp]	6.70	0.8399
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177700 [exp]	6.92	0.8406
AT3G14250			RING/U-box superfamily protein...		Potri.001G037200 [exp]	9.32	0.7632
AT3G06880			Transducin/WD40 repeat-like su...		Potri.002G021600 [exp]	9.48	0.7903

Compare expression of checked genes

Potri.002G205400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.