Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47790 534 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49040 45 / 6e-05 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT3G15980 44 / 0.0001 Coatomer, beta' subunit (.1.2.3.4.5) AT1G79990 43 / 0.0003 structural molecules (.1.2.3.4.5) AT3G16650 42 / 0.0005 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52360 42 / 0.0005 Coatomer, beta' subunit (.1.2) AT2G47990 42 / 0.0009 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G130600 [exp] 632 / 0 AT2G47790 492 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G148066 [exp] 42 / 0.0007 AT4G04940 701 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001029 [exp] 555 / 0 AT2G47790 552 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003441 [exp] 326 / 7e-112 AT2G47790 317 / 2e-108 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.002G205600.1 pacid=42777726 polypeptide=Potri.002G205600.1.p locus=Potri.002G205600 ID=Potri.002G205600.1.v4.1 annot-version=v4.1 ATGGAAGAAGCGACAGCGATGGAGGTCGAGGAACCAAAATCAAAGAAACTCGGATTAAAAAACTCAATTCAAACGAACTTCGGCAACGACTACGTCTTCC AAATCGTCCCAAAGGATGACTGGTCATCAATGGCGGTTTCTCTATCGACGAAAGCAGTGAAGCTTTATTCTCCGGAGACAGGTCAGTTCCAAGGAGAGTG TAAAGGTCACTCTGATACTATCAATCAAATTTCATTCTCTGTGTCATCATCTTCTTCGTCTCCGCATGTTTTGCATTCCTGCTCTTCTGATGGTACTATC AGAGCTTGGGACACCAGAACTTTCCAACAGGTTTCGTGTATAAGCGCTGGCTCTTATCAAGAGATTTTCAGCTTTTCATTTGGAGGGTCTAATGATAATC TTCTTGCTGCTGGCGCTAAGTCTCAGATACTTTTCTGGGATTGGAGGAACGGGAAGCAAGTTGCATGTCTGGAGGAATCTCATACTGAAGATGTCACTCA GGTCCACTTTGTCCCTGATAACCGAAACAAGCTTCTTTCAGCTTCTGTTGATGGATTGATGTGTATATTTAATACTGATGGAGATATCAATGATGATGAT CATCTGGAATCAGTGATTAATGTTGGTACTTCAATTGGGAAAGTAGGGTTTTTTGGAGAGACATATAAGAAGCTCTGGTGTTTGACACATATCGAAAGTT TAAGTATTTGGGATTGGAAGGATGCAAGAAATGAAGCAAACTTGCTGGAAGCCCGTTCATTAGCCTCTGATAGTTGGACACTAGACCATGTTGATTATTT TGTTGATTGCCACTACCCAGGAGAAGGTGAAAGTTTATGGGTAATTGGTGGCACTAATGCTGGTGCTTTAGGTTATTTTCCTGTAAATTATAGAGGAGTG GGGGCAATTGGGTCTCCAGAAGCAATTCTTGGAGGTGGCCACACAGGTGTTGTCAGGAGTGTATTGCCCGTGTCAAGCAAGAAGGGGGGACTTGCCCAAA GCCAGAGCATATTTGGATGGACTGGTGGTGAGGATGGTCGATTATGTTGCTGGTTGTCTGATGATTCTACTGAGATAAATCGATCCTGGATTTCAAGTGC ATTGGTTATGAAACCATCAAAGGCTCGCAAGAAAAAAAGGCATAATCCGTACTAG
AA sequence Show only first row Show all	>Potri.002G205600.1 pacid=42777726 polypeptide=Potri.002G205600.1.p locus=Potri.002G205600 ID=Potri.002G205600.1.v4.1 annot-version=v4.1 MEEATAMEVEEPKSKKLGLKNSIQTNFGNDYVFQIVPKDDWSSMAVSLSTKAVKLYSPETGQFQGECKGHSDTINQISFSVSSSSSSPHVLHSCSSDGTI RAWDTRTFQQVSCISAGSYQEIFSFSFGGSNDNLLAAGAKSQILFWDWRNGKQVACLEESHTEDVTQVHFVPDNRNKLLSASVDGLMCIFNTDGDINDDD HLESVINVGTSIGKVGFFGETYKKLWCLTHIESLSIWDWKDARNEANLLEARSLASDSWTLDHVDYFVDCHYPGEGESLWVIGGTNAGALGYFPVNYRGV GAIGSPEAILGGGHTGVVRSVLPVSSKKGGLAQSQSIFGWTGGEDGRLCCWLSDDSTEINRSWISSALVMKPSKARKKKRHNPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47790			Transducin/WD40 repeat-like su...		Potri.002G205600 [exp]	0	1
AT1G03330			Small nuclear ribonucleoprotei...		Potri.004G219000 [exp]	1.73	0.8185
AT5G64830			programmed cell death 2 C-term...		Potri.007G080500 [exp]	4.69	0.7833
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.010G156900 [exp]	12.00	0.7502	B5.2
AT1G70180			Sterile alpha motif (SAM) doma...		Potri.008G193300 [exp]	12.72	0.7487
AT5G30495			Fcf2 pre-rRNA processing prote...		Potri.008G206400 [exp]	15.29	0.7832
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024600 [exp]	15.49	0.7768	HSP1.1
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.004G113600 [exp]	16.88	0.7792
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Potri.004G042200 [exp]	18.33	0.7921
AT3G15460			Ribosomal RNA processing Brix ...		Potri.001G403100 [exp]	18.89	0.7493
AT5G06360			Ribosomal protein S8e family p...		Potri.006G203400 [exp]	24.65	0.7604

Compare expression of checked genes

Potri.002G205600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.