Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02880 386 / 3e-136 TPK1 thiamin pyrophosphokinase1 (.1.2.3.4) AT2G44750 363 / 3e-127 TPK2 thiamin pyrophosphokinase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G130900 [exp] 459 / 1e-165 AT1G02880 395 / 8e-141 thiamin pyrophosphokinase1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036348 [exp] 336 / 8e-117 AT1G02880 327 / 1e-113 thiamin pyrophosphokinase1 (.1.2.3.4) Lus10010283 [exp] 325 / 4e-113 AT1G02880 296 / 3e-102 thiamin pyrophosphokinase1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04263 [poplar] [flax] TPK_catalytic Thiamin pyrophosphokinase, catalytic domain PF04265 [poplar] [flax] TPK_B1_binding Thiamin pyrophosphokinase, vitamin B1 binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G205800.2 pacid=42778447 polypeptide=Potri.002G205800.2.p locus=Potri.002G205800 ID=Potri.002G205800.2.v4.1 annot-version=v4.1 ATGGATGTGATGACTCATTCTTCCACGTTCCTTCTGCCCGGCAACGACCACAGCTCCTCTGTTACCTACGCACTTGTCGTCCTTAACCAACGCCTTCCCA GATTTACTCCTATTCTCTGGGACCACGGTTCAGTATCCCTCGTGGCTTTCTCTTTCTTTGCCAATTGCCTGCCTCCTTGCATGCGTGAGCGTGACAAAGT TTTTTCTTTTGGTTTTTGGCGGTGTGTAACAGCACAGGTGCGGGTGTGCGCTGATGGAGGTGCCAATCGGGTGTTCGACGAAATGCCTCTCTTGTTCCCC CGCGATGACGCTCTTGATGTTCGACACAGGTACAAGCCAGACATAATCAAAGGGGACATGGACTCAATTCGGACAGAAGTACTGGACTTCTATACCAACT TGGGGACCAAGGTAGTTGATGAATCTCATGATCAGGATACCACAGATCTACACAAGTGTGTGGCCTACATTCGAGACTTCGCACCAAACTTGGATAAATC GAATCTCTGCATTCTTGTAGCTGGAGCACTTGGTGGGCGATTTGACCATGAGGCTGGAAACATTAACGTGCTATATCGTTTCTCAACCACGCGAATAATC CTTTTATCAGATGATTGCCTAATCTACTTACTTCCAAGGACTCACTGTCATGAGATTCATATTCAATCTTCTGTCGAGGGTCCGCATTGCGGACTCATTC CCATAGGGATGACATCTGTGAGCACTACAACAACGGGGCTTCAATGGGATCTCACTAACACGGAAATGAGGTTTGGTGATCTGGTAAGCACATCAAACTT AGTCCAAGGTGAAAAGATAACAGTGCAGTCCAGTTCTGATCTTCTTTGGACGATATCCATCAAGAAGGTGTGA
AA sequence Show only first row Show all	>Potri.002G205800.2 pacid=42778447 polypeptide=Potri.002G205800.2.p locus=Potri.002G205800 ID=Potri.002G205800.2.v4.1 annot-version=v4.1 MDVMTHSSTFLLPGNDHSSSVTYALVVLNQRLPRFTPILWDHGSVSLVAFSFFANCLPPCMRERDKVFSFGFWRCVTAQVRVCADGGANRVFDEMPLLFP RDDALDVRHRYKPDIIKGDMDSIRTEVLDFYTNLGTKVVDESHDQDTTDLHKCVAYIRDFAPNLDKSNLCILVAGALGGRFDHEAGNINVLYRFSTTRII LLSDDCLIYLLPRTHCHEIHIQSSVEGPHCGLIPIGMTSVSTTTTGLQWDLTNTEMRFGDLVSTSNLVQGEKITVQSSSDLLWTISIKKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Potri.002G205800 [exp]	0	1
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Potri.005G214300 [exp]	2.44	0.7570
AT3G13440			S-adenosyl-L-methionine-depend...		Potri.003G157201 [exp]	2.44	0.7086
AT3G61960			Protein kinase superfamily pro...		Potri.014G107000 [exp]	4.00	0.7018
AT1G01760			adenosine deaminases;RNA bindi...		Potri.014G081400 [exp]	14.69	0.6795
					Potri.009G014750 [exp]	17.08	0.7173
AT1G68500			unknown protein		Potri.010G124700 [exp]	29.10	0.7077
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.008G122901 [exp]	29.73	0.6775
AT3G02280			Flavodoxin family protein (.1)		Potri.011G027100 [exp]	29.93	0.6690
AT5G64010			unknown protein		Potri.005G064800 [exp]	32.07	0.6312
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	37.41	0.6609	ARL1.3

Compare expression of checked genes

Potri.002G205800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.