Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02890 1445 / 0 AAA-type ATPase family protein (.1.2) AT4G02480 1417 / 0 AAA-type ATPase family protein (.1) AT4G24860 813 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 744 / 0 AAA-type ATPase family protein (.1) AT3G19740 508 / 1e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 498 / 5e-160 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G50140 479 / 1e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G52882 452 / 3e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 421 / 1e-130 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G27680 292 / 1e-88 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G131000 [exp] 2073 / 0 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.012G096300 [exp] 1202 / 0 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.015G094100 [exp] 1170 / 0 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.015G026900 [exp] 484 / 9e-155 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G035400 [exp] 484 / 2e-154 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G093300 [exp] 486 / 4e-153 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G069800 [exp] 483 / 7e-152 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G097600 [exp] 431 / 2e-134 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 417 / 4e-129 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010282 [exp] 1467 / 0 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 1466 / 0 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10028752 [exp] 531 / 3e-172 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10010204 [exp] 523 / 2e-167 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 516 / 2e-164 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017535 [exp] 487 / 2e-155 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10039309 [exp] 466 / 1e-147 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027551 [exp] 465 / 5e-147 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024692 [exp] 422 / 7e-131 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10013429 [exp] 429 / 8e-131 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.002G205900.1 pacid=42779955 polypeptide=Potri.002G205900.1.p locus=Potri.002G205900 ID=Potri.002G205900.1.v4.1 annot-version=v4.1 ATGGTTGAAACCAGACGCAGCTCCTCCTCCTCCTCCAAACGATCTCTTCCTCCCTCTTCTCCTCCTCCCTCTTCTAAAAGATGCAAAGCGGCTGCTGCTG CTGCTGCATCTGAGGTATCATCGTCGACCAGCGATGTACCGACACCGGTACTGCCGATAGAAAATACAAGTCAGGAAAAGGATTCCGGGTCTGAATTAGA TTTGCAGGCTACTAAGTCTGGAGAGGAGACTCAAGCCGAGGAATTGGTGTCTTTAGATGAAGTCACTGCCAATGGAGAGAAATCCAAGGGTGCAGTAGTG CTGAACAAGTCAAAGAAGCGAGTACCAAAATCAGTAAAATCTAATGCCAAGGCTGCATGGGGCCAATTGCTGTCCCAATGTTCACAGAACCCTCACAAGC TGATAAATAGCACTCTTTTCACTGTTGGTCAAAGCCGACAATGCAATTTATGGCTTAATGATTCATCGATCAGTACTATTTTATGCAAACTGAAGCACAT AGAGCGTGGAGGTGCACCTATTGCCTTATTGGAAATCACTGGGGGAAAAGGAGCAGTCCAAGTAAATGGTAAACTTTATCAAAAGAATGAAACTTTAGCA TTAAATGGAGGCGATGAAGTGATTTTCACTACTTCTGGAAAACATGCATATATATTTCAGCAGCTAACAAGCAATAGCTTAGGCACACCAGGCATGCCTT CTGTGAGCATCTTAGAAGCCCAGAGTGCTCCTATAAAAGGGATTCACATTGAGGCAAGGTCTAGAGACCCCTCAGATTATGCAGGCGCATCAATATTGGC TTCTTTGTCACATCTTCTTCCACCTGCTGCCAAAACTGGTGAGGATGGGCAGCAAAATACAGATTTTTCCACCTTGCCTTCTGGCTGCGAAGCGTCCGAA GATCATGTTCCAGATGTTGAAATGAAGGATGGCACAAGCAATAATGATCCCAGTGATGTTTCCCCAAGCGAGAAAGCTGTTGCTCCTTCCTCTAATGCTG CCAATGAAAATGCTAATGCTGATAGCATGAGATTGGGTGCTTGTACAAATGCAGTTATTGGAAGGATTCCAAATTCAACTTATGAGTTAAAGCCATTGTT GCGGATGCTTGCAGGTTCATCTTCTGAATTTGATAAAATATTTGATGAGAGGGAAAGGAGAGAAATCCTCAAGGATCTTGATCCTCCACCAGTTCTAATG TCCACTAGACGGCAGTTGTTTAAGGATAGTTTACAAAAAGGAATTCTAAACCCTGAAGAGATTGAAGTTTCATTTGACAATTTCCCATATTATCTAAGTG ATACAACTAAGAAAGTTTTGATAGGTGGTGCATTCATCCATCTGAAATGTGGTAACAAAGTTGCAAAGTTTGCTTGCGATCTCCCTACTGTGTCCCCACG CATGTTACTATCTGGTCCTGCAGGCTCTGAAATATATCAGGAGACTCTGACAAAGGCACTTGCCAAAGATGCTGGTGCTAGACTATTAATTGTGGATTCG CTTCAATTGCCTGGTGGATCAATACACAAAGAAGCTGATTCTTCTAGAGAAAGTTTAAAATCAGAAAGAGTCTCTGCATTTGCCAAAAGAGCCATGCAGG CAGCATTACTAACTAAGAAACCTACTTCTAGTGTTGAGGCTGGCATAACTGGTTGCTCTACATTTGGTTCTCATGCCCGGCCAAAGCAGGAAACTTCTAC TGCATCATCCAAAAACTACACGTTTAAAACAGGTGACAGAGTAAAGTTTGTGGGTACCTCCTTGGCATCTGCAATTTCTTCTTTGCAGCCTCCTTTAAAG GAACCAACAATTGGTTTACGAGGCAAGGTGGTCCTTACTTTTGAAGGAAACAGTTCCTATAAAATTGGCGTTAGATTTGATCAATCCATCCCAGAAGGCA ATGACTTGGGCGGTCGTTGTGAAGAGGATCATGGTTTCTTTTGTACAGCTAATTCACTTCGTTTGGATAGTTCTGGAGGAGAAGATGTTGACAGGCTTGC TATTAATGAGCTCTTTGAGGTTGCTTTAAATGAAAGTAAAAATGCCCCCCTAATCTTGTTTTTGAAAGACTTAGAGAAGTCTCTGGTGGGAAATCAAGAT GCATACACTTCCCTAAAGAGTAAGCTTGAGAATTTACCAGAGAAAGTTATCGTAATGGGCTCCCATACCCAGATTGACAATCGTAAGGAGAAGTCCCATG CTGGTGGTCTTCTATTTACGAAGTTTGGCGGCAACCACACTGCATTACTTGATCTTGCTTTTCCGCCTCTAATTCAGGATAGCTTTGGAAGACCGAGTGA TAGGAGCAAAGAAACACCCAAAGCAATGAAGCAGCTCTCACGACTTTTCCCAAACAAAGTAACAGTACAGTTGCCACAGGATGAAGCGTTGCTTGTGGAC TGGAAACAGCAGTTGGAGCGTGATATTGAAACTCTGAAAGCACAAGCCAACATTTTTAGCTTTCGTTCAGTTCTCAGCCGAGTTGGTTTGTGTTGCCCTG ACCTAGAAACTGTGTGCCTTAAAGATCAAGCCCTTACAACTGAAAGTGTGGAGAAAGTAGTGGGATGGGCTTTGAGTCACCACTTTATGCATTGTTCTGA AGCCTCTGTCAATGATTCCAAAATTCTTATATCTTCTGAAAGCATTTTGTATGGATTGAGCGTTCTACATGGCGTACAAAATGAAAGCAAGAGCTTGAAG AAGTCACTGAAGGATGTGGTCACTGAGAATGAATTTGAGAAGAAACTTCTAGCAGATGTCATGCCTCCTAGTGACATTGGAGTTTCCTTTGATGACATTG GAGCCTTAGAAAATGTGAAGGATACCTTGAAGGAACTGGTTATGCTCCCTCTGCAAAGACCTGAATTGTTTTGCAAAGGACAGCTGACTAAGCCTTGCAA GGGAATATTGCTGTTTGGGCCTCCTGGTACTGGGAAAACAATGCTGGCAAAGGCTGTAGCAACTGAGGCTGGTGCAAACTTTATAAATATATCTATGTCG AGCATTACTTCGAAGTGGTTTGGAGAAGGCGAAAAGTATGTCAAGGCAGTGTTCTCTTTAGCTAGTAAAATCGCTCCTAGTGTTGTTTTTGTTGATGAGG TGGATAGCATGTTGGGAAGACGTGAAAATCCAGGGGAGCATGAGGCTATGCGTAAGATGAAGAATGAGTTCATGGTGAATTGGGATGGCCTGCGTACAAA AGATAAAGAACGAGTCTTGGTACTTGCTGCCACAAATAGACCTTTTGACCTTGATGAGGCTGTTATTAGGAGACTTCCCCGGAGATTAATGGTTAACTTG CCAGATGCACCGAATAGAGAAAAAATCCTGAGGGTTATCTTGGCCAAAGAAGATTTGGCACCTGATGTTGATTTAGAAGCAGTTGCAAATATGACTGATG GCTATTCTGGGAGCGATATAAAGAATCTTTGTGTTACTGCTGCACATTGTCCTATACGAGAAATTTTAAAAACGGAAAAGAAGGAAAGAACTTTGGCATT GGCTGAGAATAGTCCATTGCCCACATTGTACAGCAGTTCTGACATCCGTCCTCTTAAGATGGAGGATTTTAGATATGCACATGAACAGGTGTGTGCAAGT GTGTCGTCAGAGTCCACAAACATGAACGAGCTCCTCCAATGGAATGATCTATATGGAGAAGGTGGATCGAGAAAGAAGAAATCGCTCAGCTATTTCATGT AG
AA sequence Show only first row Show all	>Potri.002G205900.1 pacid=42779955 polypeptide=Potri.002G205900.1.p locus=Potri.002G205900 ID=Potri.002G205900.1.v4.1 annot-version=v4.1 MVETRRSSSSSSKRSLPPSSPPPSSKRCKAAAAAAASEVSSSTSDVPTPVLPIENTSQEKDSGSELDLQATKSGEETQAEELVSLDEVTANGEKSKGAVV LNKSKKRVPKSVKSNAKAAWGQLLSQCSQNPHKLINSTLFTVGQSRQCNLWLNDSSISTILCKLKHIERGGAPIALLEITGGKGAVQVNGKLYQKNETLA LNGGDEVIFTTSGKHAYIFQQLTSNSLGTPGMPSVSILEAQSAPIKGIHIEARSRDPSDYAGASILASLSHLLPPAAKTGEDGQQNTDFSTLPSGCEASE DHVPDVEMKDGTSNNDPSDVSPSEKAVAPSSNAANENANADSMRLGACTNAVIGRIPNSTYELKPLLRMLAGSSSEFDKIFDERERREILKDLDPPPVLM STRRQLFKDSLQKGILNPEEIEVSFDNFPYYLSDTTKKVLIGGAFIHLKCGNKVAKFACDLPTVSPRMLLSGPAGSEIYQETLTKALAKDAGARLLIVDS LQLPGGSIHKEADSSRESLKSERVSAFAKRAMQAALLTKKPTSSVEAGITGCSTFGSHARPKQETSTASSKNYTFKTGDRVKFVGTSLASAISSLQPPLK EPTIGLRGKVVLTFEGNSSYKIGVRFDQSIPEGNDLGGRCEEDHGFFCTANSLRLDSSGGEDVDRLAINELFEVALNESKNAPLILFLKDLEKSLVGNQD AYTSLKSKLENLPEKVIVMGSHTQIDNRKEKSHAGGLLFTKFGGNHTALLDLAFPPLIQDSFGRPSDRSKETPKAMKQLSRLFPNKVTVQLPQDEALLVD WKQQLERDIETLKAQANIFSFRSVLSRVGLCCPDLETVCLKDQALTTESVEKVVGWALSHHFMHCSEASVNDSKILISSESILYGLSVLHGVQNESKSLK KSLKDVVTENEFEKKLLADVMPPSDIGVSFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNL PDAPNREKILRVILAKEDLAPDVDLEAVANMTDGYSGSDIKNLCVTAAHCPIREILKTEKKERTLALAENSPLPTLYSSSDIRPLKMEDFRYAHEQVCAS VSSESTNMNELLQWNDLYGEGGSRKKKSLSYFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02890			AAA-type ATPase family protein...		Potri.002G205900 [exp]	0	1
AT1G09910			Rhamnogalacturonate lyase fami...		Potri.005G151500 [exp]	2.00	0.8262
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.002G081600 [exp]	2.82	0.8053	UBP26.1
AT1G58230			binding (.1)		Potri.002G111000 [exp]	3.60	0.8309
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	5.91	0.8050
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	6.92	0.8031
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.002G001000 [exp]	7.74	0.8066
AT5G44180	HD		Homeodomain-like transcription...		Potri.017G016200 [exp]	7.74	0.7926
AT5G27970			ARM repeat superfamily protein...		Potri.013G035100 [exp]	10.00	0.7663
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G182900 [exp]	11.00	0.7915
AT3G08670			unknown protein		Potri.006G110700 [exp]	11.13	0.7443

Compare expression of checked genes

Potri.002G205900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.