Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05500 238 / 4e-79 Rubber elongation factor protein (REF) (.1) AT2G47780 211 / 9e-69 Rubber elongation factor protein (REF) (.1) AT1G67360 124 / 1e-34 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G025700 [exp] 267 / 1e-90 AT3G05500 277 / 1e-94 Rubber elongation factor protein (REF) (.1) Potri.013G017300 [exp] 262 / 8e-89 AT3G05500 258 / 6e-87 Rubber elongation factor protein (REF) (.1) Potri.001G055300 [exp] 155 / 4e-47 AT1G67360 249 / 1e-83 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) Potri.003G173100 [exp] 124 / 1e-34 AT1G67360 239 / 7e-80 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020648 [exp] 256 / 3e-86 AT3G05500 317 / 2e-110 Rubber elongation factor protein (REF) (.1) Lus10029892 [exp] 249 / 1e-83 AT3G05500 317 / 3e-110 Rubber elongation factor protein (REF) (.1) Lus10015171 [exp] 238 / 4e-79 AT3G05500 282 / 1e-96 Rubber elongation factor protein (REF) (.1) Lus10031493 [exp] 230 / 1e-74 AT3G05500 285 / 4e-96 Rubber elongation factor protein (REF) (.1) Lus10015786 [exp] 138 / 4e-37 AT1G67370 600 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10037019 [exp] 136 / 2e-36 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05755 [poplar] [flax] REF Rubber elongation factor protein (REF)
Representative CDS sequence Show only first row Show all	>Potri.002G206000.1 pacid=42777336 polypeptide=Potri.002G206000.1.p locus=Potri.002G206000 ID=Potri.002G206000.1.v4.1 annot-version=v4.1 ATGGCGGAATCAGAACCCAAACAGCCAGCAGAGATGGTTGAAGGTGACGAGAAAAATCTGAAGTATTTAGATTTCGTTCAAATGGCGGCGATCTACATGG TGGTATGTTTTTCAAGCGTCTATAGATATGCGAAGGAAAATTCAGGTCCACTAAAACCGGGGGTCCGAACTGTTGAGGACACCGTCAGAACCGTTATTGG ACCGGTCTGCGACAAGTTTTATGGGGTACCCTTCCAGCTTCTCAAATTCGTCGATCACAAGATTGACGAGTCTTTGAGGGGGCTAGACAGGCAAGTCCCA TCACAAGTGAAGCGGGTGTCAATCCAAGCTCGGGCTGTAGCTTATGAGATTCAGCGCACAGGCGTGGTGGATGCGGCGATGAACATTACAAAGACGATGT ATAGCAAGTACGAGCCCACGGCCAGGGAGTTGTACTACAAGTATGAACCAGTCGCCGAGCAGTATGCAGTCTTGGCTTGGCGCTCACTGAATCGACTTCC ACTCTTCCCTCAAGTGGCTCAAATTGCAGTCCCCACAGCTGCTTTCTGGTCTGAAAAGTATAACCAGGTGGTTGGTTCTGCAGCAGAGGAGGGTTACACG ATAGCATTATACCTGCCGTTGATCCCAATTGAAAGAATTTCTAAGGTGTTTGATGAGAGTATTGGTGAGCCAGTTGTCTCAACCAATGGGGTCGTGGCTT ACTGA
AA sequence Show only first row Show all	>Potri.002G206000.1 pacid=42777336 polypeptide=Potri.002G206000.1.p locus=Potri.002G206000 ID=Potri.002G206000.1.v4.1 annot-version=v4.1 MAESEPKQPAEMVEGDEKNLKYLDFVQMAAIYMVVCFSSVYRYAKENSGPLKPGVRTVEDTVRTVIGPVCDKFYGVPFQLLKFVDHKIDESLRGLDRQVP SQVKRVSIQARAVAYEIQRTGVVDAAMNITKTMYSKYEPTARELYYKYEPVAEQYAVLAWRSLNRLPLFPQVAQIAVPTAAFWSEKYNQVVGSAAEEGYT IALYLPLIPIERISKVFDESIGEPVVSTNGVVAY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05500			Rubber elongation factor prote...		Potri.002G206000 [exp]	0	1
AT1G07985			Expressed protein (.1)		Potri.001G266500 [exp]	13.67	0.7259
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Potri.013G085201 [exp]	14.96	0.7179
AT2G17080			Arabidopsis protein of unknown...		Potri.002G012100 [exp]	38.00	0.6972
AT2G20560			DNAJ heat shock family protein...		Potri.007G135800 [exp]	41.46	0.7268
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.014G016500 [exp]	49.74	0.6834
					Potri.001G268900 [exp]	52.15	0.7124
					Potri.015G106700 [exp]	53.04	0.6781
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.001G453600 [exp]	60.65	0.7233
AT5G18290		SIP1B, SIP1;2	SMALL AND BASIC INTRINSIC PROT...		Potri.014G154400 [exp]	66.88	0.7115
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Potri.019G062600 [exp]	92.39	0.6682	Pt-GLX2.1

Compare expression of checked genes

Potri.002G206000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.