Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02910 615 / 0 LPA1 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) AT4G28740 127 / 5e-33 unknown protein AT1G55480 61 / 5e-10 ZKT protein containing PDZ domain, a K-box domain, and a TPR region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G194500 [exp] 138 / 3e-37 AT4G28740 301 / 5e-101 unknown protein Potri.003G222200 [exp] 57 / 8e-09 AT1G55480 405 / 4e-142 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Potri.001G002700 [exp] 44 / 0.0001 AT1G55480 303 / 1e-101 protein containing PDZ domain, a K-box domain, and a TPR region (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036345 [exp] 674 / 0 AT1G02910 620 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10010280 [exp] 667 / 0 AT1G02910 610 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10019188 [exp] 165 / 3e-44 AT3G14630 158 / 5e-41 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10011914 [exp] 140 / 4e-37 AT4G28740 374 / 5e-129 unknown protein Lus10022845 [exp] 69 / 9e-14 AT4G28740 206 / 8e-67 unknown protein Lus10010322 [exp] 62 / 2e-10 AT1G55480 401 / 1e-140 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Lus10013403 [exp] 54 / 9e-08 AT1G55480 395 / 3e-138 protein containing PDZ domain, a K-box domain, and a TPR region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11998 [poplar] [flax] DUF3493 Low psii accumulation1 / Rep27 CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.002G206300.1 pacid=42779018 polypeptide=Potri.002G206300.1.p locus=Potri.002G206300 ID=Potri.002G206300.1.v4.1 annot-version=v4.1 ATGGCTGCTTTTGCACTGAATCAGCAACTGCTTTGCTTCTCGAACTCGCATTCTAGGACAACAACAAAACCATGTAGTGCATGGTTACTCAGCAGCAAAA CAAGCGTGTTCAGTATTCCTCGAAAGAAGGGTCGTTTCTCTCTAACTTCTTGTAATTCTCAGTCCTCCTCTGAAGCCAATACTCAGACTGCAGAGTCCTG TGTCAATTTGGGTCTCTCCCTCTTCTCTAAAGGACGGGTTAAAGACGCTTTAGTTCAGTTTGAAACAGCACTTGATTTAGACCCCACCCCAAGGGAGGCC CAAGCTGCACTCTATAACAAAGCCTGCTGCCATGCCTACCTTCGGGAAGGGAAGAAAGCCGCTGATTGCCTGCGCACTGCTTTAAGGGAATATAACCTCA AATTTGGCACCGTTTTGAATGATCCTGACTTGGCCTCCTTTAGAGCTTTGCCTGAGTTCAAGGAATTGCAAGAAGAGGCTAGGTTAGGTGGAGAAGACAT AGGCTATGGTTTTCGTCGAGATCTCAAACTTATTAGTGAGGTCCAAGCTCCATTTCGTGGTGTTAGGAGATTCTTTTATGTGGCATTCTCAGCAGCTGCA GGGATTTCACTGTTGTTTACCATTCCAAGGCTTTTTCTTGCTATTAAAGGCGGAGGTGATGCCCCTGATCTCTGGGAAACTGCTGGAAATGCTGCAACTA ATATTGGAGGCATCATCGTTCTTGTGGCATTATTTTTATGGGACAATAAGAAAGAGGAAGAGCAACTTGCACAGATTACAAGAGATGAAACACTGTCAAG GTTGCCTTTGCGCCTTTCCACAAATCGGGTTGTTGAACTTGTCCAGCTTCGAGACACTGTTAGGCCAGTAATTTTAGCAGGAAAAAAGGATACTGTTTCC CTGGCCATGCAGAAGGCTGAGAGGTTCCGCACCGAGCTCCTCCGACGAGGTGTTCTTTTAGTTCCTGTTATTTGGGGTGAAAGCAGGGCCCCAGATGTAG AGAAGAAAGGGTTTGGTGCTCGTCAAAAGGCAGCTGCTTCTCTTCCTTCTATTGGGGAAGATTTCGAGAAACGAACTCAGTCTGTGATTGCAAAATCAAA GTTGAAAGCTGAAATTCGATTTAGAGCCGAGGTTGTATCTCCAGCTGAATGGGAAAGGTGGATAAGGGATCAGCAAAAGTCTGAAGGAGTTACTCCGGGT GAGGATGTCTATGTAATACTGCGCCTTGATGGTCGAGTTCGGAGATCGGGGAAAGGCATGCCTGACTGGCCACAAATTGTAAACGAGTTGCCACCAATGG AAGCATTCTTAAGCAAGCTGGAAAGATAG
AA sequence Show only first row Show all	>Potri.002G206300.1 pacid=42779018 polypeptide=Potri.002G206300.1.p locus=Potri.002G206300 ID=Potri.002G206300.1.v4.1 annot-version=v4.1 MAAFALNQQLLCFSNSHSRTTTKPCSAWLLSSKTSVFSIPRKKGRFSLTSCNSQSSSEANTQTAESCVNLGLSLFSKGRVKDALVQFETALDLDPTPREA QAALYNKACCHAYLREGKKAADCLRTALREYNLKFGTVLNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVAFSAAA GISLLFTIPRLFLAIKGGGDAPDLWETAGNAATNIGGIIVLVALFLWDNKKEEEQLAQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKDTVS LAMQKAERFRTELLRRGVLLVPVIWGESRAPDVEKKGFGARQKAAASLPSIGEDFEKRTQSVIAKSKLKAEIRFRAEVVSPAEWERWIRDQQKSEGVTPG EDVYVILRLDGRVRRSGKGMPDWPQIVNELPPMEAFLSKLER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Potri.002G206300 [exp]	0	1
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.010G200000 [exp]	2.23	0.9439
AT4G34090			unknown protein		Potri.009G099600 [exp]	3.16	0.9300
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Potri.002G186300 [exp]	5.74	0.9279
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Potri.012G119800 [exp]	10.00	0.9096
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Potri.014G096500 [exp]	10.67	0.9197
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	12.48	0.9213
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.019G085200 [exp]	15.49	0.8986
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Potri.001G171800 [exp]	20.09	0.8406	PDF1.2
AT5G19500			Tryptophan/tyrosine permease (...		Potri.001G224950 [exp]	21.33	0.9167
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.010G076700 [exp]	24.39	0.8579

Compare expression of checked genes

Potri.002G206300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.