Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GH3-9
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47750 865 / 0 GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) AT1G28130 719 / 0 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT4G27260 672 / 0 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT5G54510 668 / 0 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT4G37390 667 / 0 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT2G14960 653 / 0 GH3.1 Auxin-responsive GH3 family protein (.1) AT2G23170 648 / 0 GH3.3 Auxin-responsive GH3 family protein (.1) AT1G59500 630 / 0 GH3.4 Auxin-responsive GH3 family protein (.1) AT1G23160 603 / 0 Auxin-responsive GH3 family protein (.1) AT5G13320 582 / 0 WIN3, GDG1, PBS3, GH3.12 HOPW1-1-INTERACTING 3, AVRPPHB SUSCEPTIBLE 3, GRETCHEN HAGEN 3.12, GH3-LIKE DEFENSE GENE 1, Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G069000 [exp] 704 / 0 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.003G161300 [exp] 697 / 0 AT1G28130 910 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.001G410400 [exp] 665 / 0 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 660 / 0 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.013G151100 [exp] 658 / 0 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 654 / 0 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 654 / 0 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.007G050300 [exp] 644 / 0 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.014G095500 [exp] 395 / 8e-131 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014804 [exp] 661 / 0 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 654 / 0 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 645 / 0 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10039723 [exp] 639 / 0 AT5G54510 855 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 639 / 0 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 639 / 0 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 634 / 0 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10014869 [exp] 595 / 0 AT4G37390 858 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10003039 [exp] 397 / 2e-131 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10005151 [exp] 396 / 3e-131 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF03321 [poplar] [flax] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Potri.002G206400.1 pacid=42778067 polypeptide=Potri.002G206400.1.p locus=Potri.002G206400 ID=Potri.002G206400.1.v4.1 annot-version=v4.1 ATGGATGGAAAGAAATTGGAGTACAAAGGTTGGGTTGCGTTGAAAGAAATTGAGAGGCTCACAGAGAAGGCTGATGAAGTTCAGGAAACTATACTGAAAG CGATCTTAATGCAAAATGGGGAAACTGAGTATTTGAGTAAGTACATGAAGGGGTCAAAGGACGTAGACGAGTTTAAGTTCCATGTCCCTGTCATTACTTA CAAGGATGTCTGTCCTTATATCCAAAGGATTGCTACTGGAGAAGACTCTTCTCTTGTCACCGGTCATCCTGTTACTGAGATGTTATGCAGTTCAGGGACT TCTGCAGGAGAGCCTAAGTTAATGCCATCAATAGCAGAAGATCTAGATCGCCGAACCTTTGTATATAACCTCATCATGCCGATAATGAACCAGTACATCT TTGGTCTTGATGAGGGCAAAGCAATGTTCCTGTACTTTATCAAGGCGGAAATGTCTACTCCCTGTGGCTTACCAGCTCGAACTGTGCTAACTAGTTACTA CAAAAGCAAACACTTCAAGTGCCGAACCCGTGATGCATTCAATGATTTCACTAGCCCGGACCAAGCCATCCTATGCAAGGATAGCAACCAGAGCATGTAT TGCCAGTTGCTATCTGGTCTAGTTCACCGTCATCAAGTCCTAAGGCTTGGAGCTGTGTTTGCGTCAGCTTTTCTTCGAGCCATTTCATTTCTTGAGCGCA ACTGGGGTCGTCTATGCAATGATATACGCAGTGGTGACTTAGATCCTACCATCACAGATCCTGAATGTCGTTCATGCATGTCAATGTTACTAACATCACC AAATCCTTCTCTTGCGGATGAGATTGAGGATATTTGTAGCAATACATCATGGAAGGGAATTTTATGTCACCTTTGGCCCAGAGCTAAGTACATTGAGGCG GTGGTGACTGGGTCTATGGCACAATATATACCATCGCTTGAGTATTATAGTGAAGGGAAGTTGCCCTTGGTGTGTACAATGTATGCATCCTCAGAGTGTT ATTTCGGTGTCAATTTGAAACCTTTATGCGATCCTGCAGACGTGGCTTTTACCCTCTTGCCTAACATGTGTTATTTTGAGTTTATACATCTGGGAGAGAA TGGGACCTGGTTAGTGAACAAAGATGAGGAAGGAGAAGTGCCCAATGATAAGCTTGTCAATTTGGTGAATGTTAGACTCGGCTCCTACTATGAGTTGGTG GTTACTACCTTTGCTGGGCTATATCGTTATCGTATAGGCGATGTACTCCGAGTGACAGGATTTCACAATAAAGCCCCGCAATTCCAATTCATTTGTAGGA GAAATGTCGTTCTCAGCATTGACAATGACAAAACTAACGAGGAAGATCTTCACAAGAGCATCACAGCTGCGAAGAAATTACTGGAACCCTATGATGCCCT CCTCGTGGAATACACTAGCTATGCAGACACATCGTCTGTACCGGGGCACTATGTGCTGTATTGGGAAATTCTCCATGATGCATCATTCCCAGACTCTTCA GCCCAACTTGATGTCAAACTACTCCAAGAATGTTGCATTAGTGTAGAAGAAGAACTTGATTATGTGTACAGGCGATGCCGTGCTCACGACAAGTCTGTAG GACCACTAGAGATACGTGTGGTGGAGTCTGGCACATTTGAGGCACTAATGGATTTTTTCATTGGCCAAGGGGCATCAATCAATCAGTATAAAACACCAAG GAGCATCAAGTCGAATGCTGCTCTTAAGTTACTTAATTCCCATGTTAAGGCATCAGCTTTTAGTCCAAGAGATCCTGCTTGGATCCCTTGA
AA sequence Show only first row Show all	>Potri.002G206400.1 pacid=42778067 polypeptide=Potri.002G206400.1.p locus=Potri.002G206400 ID=Potri.002G206400.1.v4.1 annot-version=v4.1 MDGKKLEYKGWVALKEIERLTEKADEVQETILKAILMQNGETEYLSKYMKGSKDVDEFKFHVPVITYKDVCPYIQRIATGEDSSLVTGHPVTEMLCSSGT SAGEPKLMPSIAEDLDRRTFVYNLIMPIMNQYIFGLDEGKAMFLYFIKAEMSTPCGLPARTVLTSYYKSKHFKCRTRDAFNDFTSPDQAILCKDSNQSMY CQLLSGLVHRHQVLRLGAVFASAFLRAISFLERNWGRLCNDIRSGDLDPTITDPECRSCMSMLLTSPNPSLADEIEDICSNTSWKGILCHLWPRAKYIEA VVTGSMAQYIPSLEYYSEGKLPLVCTMYASSECYFGVNLKPLCDPADVAFTLLPNMCYFEFIHLGENGTWLVNKDEEGEVPNDKLVNLVNVRLGSYYELV VTTFAGLYRYRIGDVLRVTGFHNKAPQFQFICRRNVVLSIDNDKTNEEDLHKSITAAKKLLEPYDALLVEYTSYADTSSVPGHYVLYWEILHDASFPDSS AQLDVKLLQECCISVEEELDYVYRRCRAHDKSVGPLEIRVVESGTFEALMDFFIGQGASINQYKTPRSIKSNAALKLLNSHVKASAFSPRDPAWIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47750		GH3.9	putative indole-3-acetic acid-...		Potri.002G206400 [exp]	0	1	GH3-9
AT3G18670			Ankyrin repeat family protein ...		Potri.002G048832 [exp]	7.21	0.9106
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.002G058700 [exp]	9.27	0.9076	ATGSL11.2
AT1G67720			Leucine-rich repeat protein ki...		Potri.010G052800 [exp]	10.95	0.8982
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.004G015100 [exp]	13.03	0.8999
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	14.56	0.9014
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G036200 [exp]	16.43	0.8993
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	16.97	0.9022
AT5G63710			Leucine-rich repeat protein ki...		Potri.019G001800 [exp]	18.33	0.8881
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Potri.001G131800 [exp]	20.97	0.8919
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.007G123200 [exp]	21.02	0.8691

Compare expression of checked genes

Potri.002G206400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.