Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62000 453 / 5e-148 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 396 / 3e-128 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT2G46530 377 / 9e-122 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 365 / 3e-117 ARF ARF18 auxin response factor 18 (.1) AT4G23980 352 / 1e-111 ARF ARF9 auxin response factor 9 (.1.2) AT5G60450 341 / 7e-106 ARF ARF4 auxin response factor 4 (.1) AT1G35540 331 / 5e-104 ARF ARF14 auxin response factor 14 (.1) AT2G33860 330 / 9e-104 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G34310 326 / 2e-102 ARF ARF12 auxin response factor 12 (.1) AT5G37020 329 / 2e-101 ARF ARF8, ATARF8 auxin response factor 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135300 [exp] 1212 / 0 AT5G62000 466 / 6e-153 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G001000 [exp] 482 / 1e-161 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.004G228800 [exp] 479 / 1e-160 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.012G106100 [exp] 462 / 2e-151 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 450 / 9e-147 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 417 / 4e-135 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 409 / 1e-131 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G142100 [exp] 376 / 3e-120 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 375 / 7e-120 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007440 [exp] 463 / 9e-154 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 461 / 3e-153 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10005930 [exp] 457 / 4e-150 AT5G62000 361 / 2e-112 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 446 / 3e-145 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 444 / 2e-144 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10040906 [exp] 412 / 8e-133 AT5G62000 367 / 2e-114 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10023058 [exp] 372 / 9e-119 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10031354 [exp] 336 / 1e-103 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 336 / 1e-103 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10007386 [exp] 335 / 4e-103 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.002G207050.1 pacid=42777399 polypeptide=Potri.002G207050.1.p locus=Potri.002G207050 ID=Potri.002G207050.1.v4.1 annot-version=v4.1 ATGAGAAAGGGGGAGACGGGTAAGAAGAGGAGTGTCGCTGGCGAAGCAAAGACGTCAGGAAGTCATGAGGTTGGAGTACTTGAGACCACAAAATGGGTCA AAAATGGCTTGCCTCCTCCTCCTCACAACCCCCAAGAAAATAAAAACGATCTATATACTGAACTGTGGTATGCATGCGCCGGTCCTCTAGTTTATGTACC GCGAGTTGGTGACAAGGTTTTCTACTTCCCACAGGGTCACCTGGAACAGGTTGCTGCATTCTTGAATGAAGATAGTAAGACGGCAATGCCCATCTACGAT TTACCTTACAAGATCCTCTGCAAGGTCGTCCATGTTCAACTTAAGGCTGAAGCTAAAACAGATGAGGTGTTTGCCCACATAACTTTGCTTCCAGTAGCAG AGGGAGATGAGCTAAGCTCAAACAAGGATGGAGAGTCCCTTCTGTTGCATAGAAAAACTCGTGTGCTATCCTTTACCAAGAAACTTACTCCATCTGACAC AAGCACACAAGGTGGATTCTCTGTTCCAAAGCGACATGCAGAAGAGTCCCTTCCACCTTTGGACAAGTCTCAGCAACCCCCAGCACAGGAACTTCTCGCC AAAGACTTGCATGGTTCTGAATGGCGCTTTAGACATATCTATAGAGGCCAACCAAAGAGGCATTTGCTTACTGGTGGTTGGAGCACATTTATCTCTTCAA AAAGGGTTGTTGCTGGGGATTCTTTTATCTTCCTTCGAGGCGAATCTGGAGAACTTCGGGTTGGGGTCCGTCGAGCAATGAAACTAGAGAACAATTTATC AGCGAATGTCGTAACTGCCCATAGCATGCAACTTGGAATACTTTCCAGTGCTTCCCATGCCATTTCTACTGGAAGCATTTTTACAATCTTCTTCCATCCT TGGACAAGTCCTGCTGAATTTATCATTCCATTTGATCAATACATGAAGTCAGCTGAAATTGAGTACTCCATTGGGACAAGATTCATCATGCAGTTTGAAG GAGAGGAATGCACAGAACAGAGTACCTTTAGGATCGAAAGATGTGAGGGCACTGTAGTTGGTGCTGAAGATGTTGATCATATTCGGTGGCCCAACTCAGA ATGGAGGATTCTCAAGGTAAAATGGGATGCTGCTTCAGATGCATTCGTGCATCCAGAACGTGTTTCTCCCTGGAACATTGAGCCTATAGAACCTATAAGA AAGAAGCATGCTTCTCTTGTACATCAAGGAAAGAAGGCATGTATAGCAGACAAATCACTGCCTAGGTTTCTTATCTCTGTCAAGGATGGCTTATTGCATA GTTCAGTTGAGTATGCAAATCGAAGCCACTTAAAGGTCTTCCAAGGTCAAGTAGATAGGGATACGGGTGCTAATAAATTTGGTGCATTTAAACAGCCTAC AATAGCACATTTGCTTTCCCCTCCAAATCCTGAATGGAACTTCTCACCAATCGGAAAAGATAATCAGGAGCAGTTTTGGATGCATGGCCCCGTTTATCCG TGTCCCAGCAGTACAGTATCATTTCCTGGTGGAAACATAGCAAGGCTGGGTAATCCTAATAGCTGGTGCTCCACACCTAGCTCTTATGGAGTCCATGATA ATGCTGTTGGAAGCAGAAGCTTGTCAGTTCCATTTGTCTCTCACAATTCTGGGTCTCAGAAGTGGAGAGGTTTTGAACTGAAGCATGCAAACGAAGTTCC ACTTGCTGCCCCGCACAGTGGTGGCAGCAGTTATATGCTTTTCGGTGTCAATTTAGAAAATAATCCACCGGAGCTCCCTTCACCACAAGTTGCCACTTCT GTTGTGCTTGAAAATCACAATTATGTTCCCCTAACATCTCAGTCGAGTGTTTCAGAGCCATCAAAGAGTACATCAGGTGTTAATTCTGATAAACAATGCA GGAACTGTTCCTCGGCTGCTATTCCTAGTTGCACAAAGGTGCTCAAATATGGAACTGTACTAGGAAGATCAGTTGATCTCACACAATTCGATGGGTACAG TGAACTCATTTGTGAGCTTGACCTGATGTTTGACTTCCAAGAAAGTTTGATTGATGGGACCAGCGGGTGGTGTGTAGCGTACTCGGACAATGAAGGGGAC ATGATACAGATTGCAGATTGCCCATGGCAGGAATTCCTATCAGCGGTCCATAGGATTTTCATCTGTCCCAAGGAAGAAACTGGCAAGCTGAATCCAGTCT CACCAAATCCATCACCTTCAGAGTAA
AA sequence Show only first row Show all	>Potri.002G207050.1 pacid=42777399 polypeptide=Potri.002G207050.1.p locus=Potri.002G207050 ID=Potri.002G207050.1.v4.1 annot-version=v4.1 MRKGETGKKRSVAGEAKTSGSHEVGVLETTKWVKNGLPPPPHNPQENKNDLYTELWYACAGPLVYVPRVGDKVFYFPQGHLEQVAAFLNEDSKTAMPIYD LPYKILCKVVHVQLKAEAKTDEVFAHITLLPVAEGDELSSNKDGESLLLHRKTRVLSFTKKLTPSDTSTQGGFSVPKRHAEESLPPLDKSQQPPAQELLA KDLHGSEWRFRHIYRGQPKRHLLTGGWSTFISSKRVVAGDSFIFLRGESGELRVGVRRAMKLENNLSANVVTAHSMQLGILSSASHAISTGSIFTIFFHP WTSPAEFIIPFDQYMKSAEIEYSIGTRFIMQFEGEECTEQSTFRIERCEGTVVGAEDVDHIRWPNSEWRILKVKWDAASDAFVHPERVSPWNIEPIEPIR KKHASLVHQGKKACIADKSLPRFLISVKDGLLHSSVEYANRSHLKVFQGQVDRDTGANKFGAFKQPTIAHLLSPPNPEWNFSPIGKDNQEQFWMHGPVYP CPSSTVSFPGGNIARLGNPNSWCSTPSSYGVHDNAVGSRSLSVPFVSHNSGSQKWRGFELKHANEVPLAAPHSGGSSYMLFGVNLENNPPELPSPQVATS VVLENHNYVPLTSQSSVSEPSKSTSGVNSDKQCRNCSSAAIPSCTKVLKYGTVLGRSVDLTQFDGYSELICELDLMFDFQESLIDGTSGWCVAYSDNEGD MIQIADCPWQEFLSAVHRIFICPKEETGKLNPVSPNPSPSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.002G207050 [exp]	0	1
AT1G23080		PIN7, ATPIN7	ARABIDOPSIS PIN-FORMED 7, Auxi...		Potri.014G146800 [exp]	3.31	0.8498	PIN15
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.001G086700 [exp]	5.47	0.8444
					Potri.014G002301 [exp]	12.64	0.8006
AT3G17070			Peroxidase family protein (.1)		Potri.004G006350 [exp]	12.96	0.8071
AT2G48020			Major facilitator superfamily ...		Potri.014G136600 [exp]	13.41	0.8353
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Potri.004G086500 [exp]	19.79	0.8481
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.013G027000 [exp]	20.83	0.8204	IFS1.31
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.017G110500 [exp]	22.80	0.8351
AT4G32800	AP2_ERF		Integrase-type DNA-binding sup...		Potri.018G085700 [exp]	29.29	0.7323
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.008G026200 [exp]	38.14	0.6823

Compare expression of checked genes

Potri.002G207050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.