Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47940 931 / 0 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT5G40200 516 / 1e-177 DEGP9 DegP protease 9 (.1) AT5G36950 405 / 3e-134 DEGP10 DegP protease 10 (.1) AT1G65630 361 / 2e-117 DEGP3 DegP protease 3 (.1) AT1G65640 305 / 2e-97 DEGP4 DegP protease 4 (.1) AT3G16540 293 / 3e-91 DEGP11 DegP protease 11 (.1) AT5G40560 286 / 1e-90 DEGP13 DegP protease 13 (.1) AT3G16550 270 / 2e-83 DEGP12 DEGP protease 12 (.1) AT1G51150 132 / 3e-35 DEGP6 DegP protease 6 (.1) AT5G54745 109 / 4e-27 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135200 [exp] 1129 / 0 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.012G077900 [exp] 535 / 0 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.015G073100 [exp] 530 / 0 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.008G079900 [exp] 414 / 1e-137 AT5G36950 857 / 0.0 DegP protease 10 (.1) Potri.001G348800 [exp] 85 / 3e-17 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.013G018300 [exp] 79 / 2e-15 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.004G129200 [exp] 59 / 5e-09 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.011G083300 [exp] 44 / 0.0002 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.007G067850 [exp] 42 / 0.0002 AT5G40200 45 / 5e-06 DegP protease 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032163 [exp] 511 / 9e-176 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10014524 [exp] 509 / 5e-175 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10005931 [exp] 438 / 1e-148 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10024525 [exp] 396 / 5e-131 AT5G36950 764 / 0.0 DegP protease 10 (.1) Lus10008726 [exp] 261 / 2e-81 AT5G36950 443 / 7e-153 DegP protease 10 (.1) Lus10008727 [exp] 119 / 4e-30 AT5G36950 286 / 5e-94 DegP protease 10 (.1) Lus10040905 [exp] 115 / 6e-30 AT2G47940 110 / 5e-29 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10008781 [exp] 82 / 2e-16 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10037815 [exp] 71 / 9e-13 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10022234 [exp] 64 / 2e-10 AT3G27925 623 / 0.0 DegP protease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [poplar] [flax] Peptidase_PA PF13365 [poplar] [flax] Trypsin_2 Trypsin-like peptidase domain
Representative CDS sequence Show only first row Show all	>Potri.002G207200.2 pacid=42777577 polypeptide=Potri.002G207200.2.p locus=Potri.002G207200 ID=Potri.002G207200.2.v4.1 annot-version=v4.1 ATGGCCACGGCAGTCGCCAACTGCTGCTTCTCTGTTCTCACCTCCACCGTTAAATTCCGTTGCTGTGTTTCTTCCCAACGATATCTCGCCACGTCGCATC ATTCCATTGCTTCGGTCACTTGTAAAGCCGTCGTCAATCACAAGAGACGCCCTTCTTCTAATCGAGATAGAGAACTTAAGGAAGGTGTTTCACAGAAGAA ATCTTCGAGGAAATCGAAGGACGAGAGGTCCTATATACTCGATGATGATGATGGAATCAGGGGTAAAAGGAAAGCAGGCAGATCCCAATCAGCGGCTTTT AAGTCATTCGGAGGGCAAAGAAAAGATAAGAATGAGTCTAAGTTTGATATGAAGGAACAACAGATTGAGCCACAGAATCTTAAAGATGCAGCTTTTTTAG ATGCAGTTGTCAAGGTCTACTGCACCCATACTGAGCCTGATTATTCCCTTCCCTGGCAAAAGCAAAGGCAATACACAAGCACAGGAAGTGCTTTTATGAT CGGCAATGGAAAGCTTTTGACAAATGCTCATTGTGTTGAACATTATACACAGGTCAAAGTGAAGAGAAGGGGAGATGATACCAAATATGTGGCTAAGGTA CTGGCCAGAGGAGTTGATTGCGATATAGCTTTGCTTTCAGTAGAAAGTGAGGAATTCTGGGAAGGAGCAGAACCACTCGAGTTTGGATGCTTACCACGTC TTCAGGATGCAGTAACAGTTGTAGGATATCCCCTTGGTGGAGACACCATTTCAGTGACAAAGGGGGTTGTGTCTCGTATAGAGGTTACATCTTATGCGCA TGGATCATCTGATTTGTTGGGCATTCAAATTGATGCAGCAATAAATCCTGGTAACAGTGGTGGTCCTGCATTCAGTGACCAGGGGGAGTGCATTGGAGTA GCATTTCAGGTATACAGATCTGAAGAGGTCGAGAATATTGGATATGTGATTCCAACAACAGTTGTATCTCATTTTCTAAATGACTATGAGAGAACTGGGA GATACACTGGCTTTCCTTCCCTTGGTGTGTTGCTGCAAAAGTTGGAGAATCCAGCATTACGTGCATGGTTAAAAGTAAATTCTAATGAGGGTGTGTTGGT ACGAAGAGTTGAACCAATCTCTGATGCTAATAGAGTCTTAAAGGAGGGGGACGTGATTGTGAGCTTTGATGATGTTAATGTAGGATGTGAAGGAACAGTG CCATTTCGATCAAATGAGCGCATTGCATTCCGTTATCTTATTAGTCAAAAATTCACAGGTGATGTGGCAGAGCTTGGCATAATTAGAGCTGGGTCATTCA TGAAAGTTAAAGTAGTTCTTAATCCAAGAGTGAATTTGGTTCCATATCATGTTGATGGAGGTCAGCCTTCGTATTTAATAATTGCTGGTTTGGTGTTTAC CCCACTTTCGGAACCACTGATGGAGGAGGAATGTGAAGACTCTATAGGGTTGAAACTGCTAGCAAAGTCACGTTATTCTCTGGCAAGGTTCAAAGGGGAG CAAATTGTTATCGTATCACAGGTCTTGGCAAATGAAGTCAACTTTGGATATGAGGAAATGAGCAATCAACAGGTTTTGAAGTTCAATGGAACTCAAATAA AAAACATCCATCACCTAGCACACCTTGTCGATTCATGCAAGAACAAATATTTAGTTTTCGAGTTTGAAGACAATTACCTTGTTGTGCTGGAGAGAGAAGC AGCGAGTGCTTCTTCATTCTACATTCTCAAAGATTATGGAATCCCATCTGAACGATCTTCCGATCTATCGGAGCCATATGTGGATTCATTGAAAGACAAC CAAGCTGCAGTTCAGGATTTTGGCAACAGCCCAATTTCAAATCTGGAAATTGGCTTTGATGGACTCCTCTGGGCATGA
AA sequence Show only first row Show all	>Potri.002G207200.2 pacid=42777577 polypeptide=Potri.002G207200.2.p locus=Potri.002G207200 ID=Potri.002G207200.2.v4.1 annot-version=v4.1 MATAVANCCFSVLTSTVKFRCCVSSQRYLATSHHSIASVTCKAVVNHKRRPSSNRDRELKEGVSQKKSSRKSKDERSYILDDDDGIRGKRKAGRSQSAAF KSFGGQRKDKNESKFDMKEQQIEPQNLKDAAFLDAVVKVYCTHTEPDYSLPWQKQRQYTSTGSAFMIGNGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKV LARGVDCDIALLSVESEEFWEGAEPLEFGCLPRLQDAVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSDLLGIQIDAAINPGNSGGPAFSDQGECIGV AFQVYRSEEVENIGYVIPTTVVSHFLNDYERTGRYTGFPSLGVLLQKLENPALRAWLKVNSNEGVLVRRVEPISDANRVLKEGDVIVSFDDVNVGCEGTV PFRSNERIAFRYLISQKFTGDVAELGIIRAGSFMKVKVVLNPRVNLVPYHVDGGQPSYLIIAGLVFTPLSEPLMEEECEDSIGLKLLAKSRYSLARFKGE QIVIVSQVLANEVNFGYEEMSNQQVLKFNGTQIKNIHHLAHLVDSCKNKYLVFEFEDNYLVVLEREAASASSFYILKDYGIPSERSSDLSEPYVDSLKDN QAAVQDFGNSPISNLEIGFDGLLWA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.002G207200 [exp]	0	1
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.008G101800 [exp]	3.00	0.8787
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Potri.010G065000 [exp]	3.16	0.8357	CHM.1
AT1G34380			5'-3' exonuclease family prote...		Potri.013G114400 [exp]	3.60	0.8347
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.008G205900 [exp]	3.87	0.8737
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Potri.002G252800 [exp]	4.89	0.8783	Pt-PIL5.1
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Potri.001G224500 [exp]	6.24	0.8052
AT1G78810			unknown protein		Potri.011G109600 [exp]	7.14	0.8280
AT1G68890			magnesium ion binding;thiamin ...		Potri.010G135500 [exp]	8.94	0.8305
					Potri.003G044301 [exp]	11.48	0.8348
AT5G15270			RNA-binding KH domain-containi...		Potri.008G088600 [exp]	12.04	0.8177

Compare expression of checked genes

Potri.002G207200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.