Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48910 429 / 4e-150 YUC10 YUCCA 10, Flavin-containing monooxygenase family protein (.1) AT1G21430 380 / 6e-131 YUC11 Flavin-binding monooxygenase family protein (.1) AT4G28720 363 / 2e-123 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 362 / 2e-123 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT4G13260 360 / 2e-122 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT1G04180 359 / 3e-122 YUC9 YUCCA 9 (.1) AT1G04610 354 / 7e-120 YUC3 YUCCA 3 (.1) AT5G25620 351 / 6e-119 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 346 / 6e-117 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT5G11320 342 / 1e-115 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186100 [exp] 430 / 2e-150 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1) Potri.005G111800 [exp] 424 / 3e-148 AT1G21430 425 / 4e-148 Flavin-binding monooxygenase family protein (.1) Potri.016G003300 [exp] 423 / 8e-148 AT1G21430 436 / 7e-153 Flavin-binding monooxygenase family protein (.1) Potri.006G248200 [exp] 357 / 2e-121 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 354 / 3e-120 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.018G036800 [exp] 351 / 1e-118 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.008G174600 [exp] 350 / 2e-118 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.006G243400 [exp] 348 / 2e-117 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.010G062400 [exp] 345 / 2e-115 AT1G04610 657 / 0.0 YUCCA 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002402 [exp] 401 / 6e-139 AT1G21430 427 / 5e-149 Flavin-binding monooxygenase family protein (.1) Lus10011093 [exp] 357 / 2e-121 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10035244 [exp] 356 / 5e-121 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10008092 [exp] 354 / 2e-120 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10013125 [exp] 353 / 6e-120 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10023695 [exp] 352 / 4e-119 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10011274 [exp] 350 / 2e-118 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10022851 [exp] 348 / 1e-117 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10023637 [exp] 343 / 3e-116 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10041729 [exp] 338 / 1e-113 AT5G25620 473 / 6e-166 YUCCA6, Flavin-binding monooxygenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00743 [poplar] [flax] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Potri.002G207400.5 pacid=42777006 polypeptide=Potri.002G207400.5.p locus=Potri.002G207400 ID=Potri.002G207400.5.v4.1 annot-version=v4.1 ATGCAAGACCCAGTTGCAATCATAGTTGGAGCTGGTCCCTCTGGCTTAGCCACCTCTGCCTGCCTAAACCAGCATTCAATCCCTCACATACTCCTTGAAA GAGAAGATTGCTATGCTTCTCTTTGGAAAAAATACTCGTATGATCGTCTACGCCTTCACTTGAGAAAACAGTTCTGCGAGCTACCTCGCATGTCATTTCC TGACTCATACCCCACGTATGTCCCAAAAGATCAGTTCTTACAATACTTAGATGACTATGTTTCCCACTTCAAGATCAGTCCCATGTACCAGAGAAGTGTT GAGTTTGCGAGTTTCGATGAAGAAGCCAAGAAATGGAATGTTAAGGCTAGAAATGTGAGTTCTGGGGAGATTGAGGAATACTCTGCGAGGTTTTTGGTGG TGGCTAGTGGAGAAACGAGCAATCCTTTTATACCAGAGTTCGAAGGATTGAACACTTTCACTGGAGAGGTTCTTCACTCTACTGAATTCAAAAATGGAAA GACTTACTGTGATAAGAATGTTTTGGTTGTTGGGTCTGGTAATTCTGGCATGGAAATTGCATTAGACCTCGCAAACCATGGTGCAAGAACATCAATCGCC ATCCGTAGTCCGATTCACATTCTATCGAGGGAGATGGTATACTTGGGATTGAATATGTTGAAGTATTTTTCATGTGGCATGGTGGACAAAGTTATGGTGA TGCTTAGCAAACTTGTTTATGGAGACTTAAGCAAGCATGGGATAAAGAGACCAAAAGAGGGGCCGTTTTTCATGAAAGTTGCTTACGGGAAGTATCCAGT TTTCGATGTCGGTACCTGCAACAAAATCAAGTCCGGAGAGATCCAGGTCTTGCCCGCACTAGAAAGCATAAGAGGCAATGAGGTGGTATTTGAAAATGGC AAGTCACACCCCTTTGACACCATTGTTTTTTGTACTGGCTTCGAGAGATCAACTAATAAGTGGCTCAAGGGGGATGATTACCTTTTGAATGAAGATGGGA TTCCAAAGCCAGGTTACCCTAACCATTGGAAGGGGAAGGACGGTTTGTATTGCATTGGATTATCAAGGAGAGGTTTGTATGGAGCTAGCGCGGATGCACA GAATGTAGTCAACGATATCAAGGCACTCATTTAG
AA sequence Show only first row Show all	>Potri.002G207400.5 pacid=42777006 polypeptide=Potri.002G207400.5.p locus=Potri.002G207400 ID=Potri.002G207400.5.v4.1 annot-version=v4.1 MQDPVAIIVGAGPSGLATSACLNQHSIPHILLEREDCYASLWKKYSYDRLRLHLRKQFCELPRMSFPDSYPTYVPKDQFLQYLDDYVSHFKISPMYQRSV EFASFDEEAKKWNVKARNVSSGEIEEYSARFLVVASGETSNPFIPEFEGLNTFTGEVLHSTEFKNGKTYCDKNVLVVGSGNSGMEIALDLANHGARTSIA IRSPIHILSREMVYLGLNMLKYFSCGMVDKVMVMLSKLVYGDLSKHGIKRPKEGPFFMKVAYGKYPVFDVGTCNKIKSGEIQVLPALESIRGNEVVFENG KSHPFDTIVFCTGFERSTNKWLKGDDYLLNEDGIPKPGYPNHWKGKDGLYCIGLSRRGLYGASADAQNVVNDIKALI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48910		YUC10	YUCCA 10, Flavin-containing mo...		Potri.002G207400 [exp]	0	1
AT3G21690			MATE efflux family protein (.1...		Potri.011G002500 [exp]	1.00	0.9156
AT2G38185			RING/U-box superfamily protein...		Potri.006G100400 [exp]	2.44	0.8680
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028450 [exp]	4.47	0.8901
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028200 [exp]	5.47	0.8818	CYP81R2v2,IFS1.55
AT4G26840		ATSUMO1, SUMO1,...	ARABIDOPSIS THALIANA SMALL UBI...		Potri.002G224700 [exp]	6.70	0.8289	Pt-SUM1.1
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028150 [exp]	6.92	0.8817
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.017G128900 [exp]	8.83	0.8387	Pt-MYB.42,MYB181
AT5G10610		CYP81K1	"cytochrome P450, family 81, s...		Potri.017G028100 [exp]	10.00	0.8717
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.008G125700 [exp]	14.69	0.8104	RHA2.1
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.001G229166 [exp]	15.87	0.8389

Compare expression of checked genes

Potri.002G207400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.