Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02930 267 / 1e-91 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT1G02920 263 / 4e-90 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1) AT2G02930 262 / 2e-89 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT2G47730 261 / 3e-88 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT4G02520 259 / 3e-88 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1) AT1G02950 257 / 4e-87 GST31, ATGSTF4 GLUTATHIONE S-TRANSFERASE 31, glutathione S-transferase F4 (.1.2.3.4) AT1G02940 224 / 6e-74 ATGSTF5 glutathione S-transferase (class phi) 5 (.1) AT3G62760 184 / 9e-59 ATGSTF13 Glutathione S-transferase family protein (.1) AT3G03190 182 / 7e-58 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT2G30860 172 / 6e-54 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G207286 [exp] 425 / 4e-154 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207093 [exp] 297 / 2e-103 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207672 [exp] 203 / 2e-66 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.014G132200 [exp] 200 / 5e-65 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G015200 [exp] 182 / 7e-58 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.017G138800 [exp] 170 / 2e-53 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G015100 [exp] 167 / 4e-52 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.019G077000 [exp] 61 / 1e-10 AT1G57720 303 / 1e-99 Translation elongation factor EF1B, gamma chain (.1.2) Potri.001G105600 [exp] 59 / 2e-10 AT5G41210 358 / 1e-126 glutathione S-transferase THETA 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026643 [exp] 281 / 3e-97 AT2G47730 269 / 2e-91 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10030414 [exp] 274 / 3e-94 AT2G47730 267 / 1e-90 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10037121 [exp] 264 / 4e-90 AT2G47730 243 / 2e-81 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10004151 [exp] 180 / 3e-57 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 179 / 1e-56 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 178 / 1e-56 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 177 / 9e-56 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10001419 [exp] 175 / 3e-55 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 168 / 2e-52 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10005634 [exp] 164 / 1e-50 AT2G30860 177 / 1e-55 glutathione S-transferase PHI 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF00043 [poplar] [flax] GST_C Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF02798 [poplar] [flax] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G207479.1 pacid=42776804 polypeptide=Potri.002G207479.1.p locus=Potri.002G207479 ID=Potri.002G207479.1.v4.1 annot-version=v4.1 ATGGCAACCTTGAAACTCCATGGAACCCCTATATCGACCAACACACAGCGAGTTCTTGCAACCCTTTACGAGAAAGAGGTAGAATTTGAGCTTGTTAATG TCAATTTGGGAGCTGGGGAACACAAGCAAGAGCCCCATATTTCCCTCAATCCATTTGGTCAAGTTCCAGCTGCTGTTGATGGAGATCTTAAGCTCTTTGA ATCAAGAGCAATTTCACAGTACGTAGCCCACCAATATGCTAGCAAGGGGACTCAACTGGGCGCTGCAGGAAACGGGTATGCAACAATTTTGGTATGGCAA GAAGTGGAGTCTCACCAGTTCGACCCATCAGCCTCAAAACTGGTGTGGGAGCAAGTTTTTAAACCAGTTTTTGGGTTACCAACAGATGCAGCTCTAGTTG CCGAGACGGAGGTGACTCTCGGTAAGGTTCTAGATGTGTACGAGGCAAGACTGTCTCAATCCAAGTACCTAGCCAGTGACAGCTTCACCTTGGCCGATCT GCACCACCTCCCTAACATCCAGGCCTTGTTGGGGACTCCATCCAAGAAATTGTTCGATTCTCGCCCCCATGTTAGCGCATGGGTTGCCAGTATCACTGGA AGGCCAGCTTGGGGCAAGGTGCTCGCTTTGCTTCCCAAGTAA
AA sequence Show only first row Show all	>Potri.002G207479.1 pacid=42776804 polypeptide=Potri.002G207479.1.p locus=Potri.002G207479 ID=Potri.002G207479.1.v4.1 annot-version=v4.1 MATLKLHGTPISTNTQRVLATLYEKEVEFELVNVNLGAGEHKQEPHISLNPFGQVPAAVDGDLKLFESRAISQYVAHQYASKGTQLGAAGNGYATILVWQ EVESHQFDPSASKLVWEQVFKPVFGLPTDAALVAETEVTLGKVLDVYEARLSQSKYLASDSFTLADLHHLPNIQALLGTPSKKLFDSRPHVSAWVASITG RPAWGKVLALLPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02930		ATGST1, GST1, E...	EARLY RESPONSIVE TO DEHYDRATIO...		Potri.002G207479 [exp]	0	1
AT4G36850			PQ-loop repeat family protein ...		Potri.007G031800 [exp]	2.64	0.7984
AT1G59530	bZIP	ATBZIP4	basic leucine-zipper 4 (.1)		Potri.002G115900 [exp]	4.24	0.8538
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.002G118900 [exp]	6.16	0.7618
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.008G136100 [exp]	7.34	0.8030	RDR902,Pt-RDRP.1
AT2G35790			unknown protein		Potri.008G042800 [exp]	8.24	0.8307
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.014G016500 [exp]	16.52	0.7392
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.017G039800 [exp]	17.14	0.7613
AT2G20560			DNAJ heat shock family protein...		Potri.007G136400 [exp]	17.17	0.8035
AT5G06850			C2 calcium/lipid-binding plant...		Potri.016G049300 [exp]	18.89	0.8084
					Potri.015G106700 [exp]	23.23	0.7324

Compare expression of checked genes

Potri.002G207479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.