Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62760 303 / 2e-105 ATGSTF13 Glutathione S-transferase family protein (.1) AT1G02930 208 / 2e-68 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT1G02920 207 / 5e-68 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1) AT4G02520 207 / 8e-68 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1) AT2G47730 205 / 2e-66 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT2G02930 203 / 3e-66 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT2G30860 196 / 2e-63 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G30870 192 / 6e-62 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT1G02950 181 / 4e-57 GST31, ATGSTF4 GLUTATHIONE S-TRANSFERASE 31, glutathione S-transferase F4 (.1.2.3.4) AT5G17220 179 / 8e-57 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132200 [exp] 410 / 8e-148 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G207093 [exp] 214 / 2e-70 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.017G138800 [exp] 207 / 1e-67 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G207479 [exp] 204 / 2e-66 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 201 / 3e-65 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G015200 [exp] 191 / 2e-61 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G015100 [exp] 172 / 6e-54 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.004G232600 [exp] 71 / 7e-15 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.005G182000 [exp] 66 / 1e-12 AT1G77290 414 / 4e-148 Glutathione S-transferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026643 [exp] 211 / 2e-69 AT2G47730 269 / 2e-91 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10030414 [exp] 207 / 1e-67 AT2G47730 267 / 1e-90 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10029815 [exp] 206 / 2e-67 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 206 / 2e-67 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10020735 [exp] 204 / 1e-66 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 197 / 5e-64 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 197 / 6e-64 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10037121 [exp] 191 / 2e-61 AT2G47730 243 / 2e-81 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10029816 [exp] 191 / 2e-61 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2) Lus10023511 [exp] 184 / 1e-58 AT5G17220 240 / 2e-80 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF00043 [poplar] [flax] GST_C Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF02798 [poplar] [flax] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G207672.1 pacid=42777173 polypeptide=Potri.002G207672.1.p locus=Potri.002G207672 ID=Potri.002G207672.1.v4.1 annot-version=v4.1 ATGGTGCTTAAGTTGTATGGAGCACCCATGTCCACATGCACCTCTCGCGTGCTGACATGCCTCCATGAGAAGAACTTGGATTTTGAGCTTGTCCCAGTTG ATCTTTTCGCTGGCGAGCACAAGCAGCCTCCTTTCCTGGCCAAAAATCCCTTTGGTCAGATTCCAGCTCTTGAAGAAGATGATCTTACTTTATTCGAATC CAGGGCAATCACATCATACATTGCTGAGAAGTTCAAGGGGACTGGCTACGATCTTATAAGGCACGAAAACCTCAAAGAAGCTGCATCGGTGAAGGTATGG ACAGAGGTAGAATCCCACCGATATAACCCTGCGATAGCACCGATTGTCTTTCAATTCATGGTGGCTCCACTTCGAGGCAATTCACCTGATCAAACAATCA TTGACGACAACGTAGAGAAGCTAGGAAAAGTGCTTGACATATATGAAGCTAAGCTGAGTAGCACCAAGTACCTTGCTGGGGATTTCTATAGCTTGGCTGA CCTTCACCACCTACCATACACGTACTATCTCATGAAGACTCCCGCAGCTTCGGTGGTGAATGAGCGTCCGCATGTGAAGGCATGGTGGGAGGATATTTCT TCTAGGCCAGCTTTTAAGAAAGTGGCCGAGGGTATGAATTTTGTTAAGAAATGA
AA sequence Show only first row Show all	>Potri.002G207672.1 pacid=42777173 polypeptide=Potri.002G207672.1.p locus=Potri.002G207672 ID=Potri.002G207672.1.v4.1 annot-version=v4.1 MVLKLYGAPMSTCTSRVLTCLHEKNLDFELVPVDLFAGEHKQPPFLAKNPFGQIPALEEDDLTLFESRAITSYIAEKFKGTGYDLIRHENLKEAASVKVW TEVESHRYNPAIAPIVFQFMVAPLRGNSPDQTIIDDNVEKLGKVLDIYEAKLSSTKYLAGDFYSLADLHHLPYTYYLMKTPAASVVNERPHVKAWWEDIS SRPAFKKVAEGMNFVKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62760		ATGSTF13	Glutathione S-transferase fami...		Potri.002G207672 [exp]	0	1
AT2G47115			unknown protein		Potri.014G115200 [exp]	2.44	0.8811
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.012G024600 [exp]	4.12	0.8205
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Potri.010G213000 [exp]	6.63	0.8561	CHI.1
					Potri.006G256900 [exp]	7.61	0.8580
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G171400 [exp]	8.48	0.8576
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.005G207600 [exp]	8.94	0.8485
					Potri.001G062100 [exp]	9.16	0.8276
AT4G24204			RING/U-box superfamily protein...		Potri.007G050500 [exp]	9.48	0.8405
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Potri.007G010300 [exp]	11.13	0.7908
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113700 [exp]	13.85	0.8349

Compare expression of checked genes

Potri.002G207672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.