Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47920 137 / 9e-38 Kinase interacting (KIP1-like) family protein (.1) AT1G03470 132 / 1e-35 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT1G03080 113 / 2e-26 kinase interacting (KIP1-like) family protein (.1) AT4G02710 110 / 1e-25 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 109 / 1e-25 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT3G22790 109 / 2e-25 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 107 / 1e-24 kinase interacting (KIP1-like) family protein (.1) AT5G58320 103 / 2e-23 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT2G22560 101 / 1e-22 Kinase interacting (KIP1-like) family protein (.1) AT4G03153 96 / 2e-22 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135000 [exp] 272 / 1e-87 AT2G47920 129 / 4e-35 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 113 / 6e-27 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 114 / 1e-26 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.003G164200 [exp] 108 / 1e-26 AT1G03080 109 / 1e-26 kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 113 / 2e-26 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.013G158100 [exp] 112 / 2e-26 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 108 / 5e-25 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.005G213400 [exp] 107 / 1e-24 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 105 / 7e-24 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040904 [exp] 134 / 3e-35 AT1G03470 110 / 5e-28 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Lus10005933 [exp] 132 / 2e-34 AT1G03470 110 / 7e-28 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Lus10014687 [exp] 111 / 7e-26 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 111 / 9e-26 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 110 / 1e-25 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 110 / 2e-25 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 108 / 9e-25 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 103 / 2e-23 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 97 / 4e-21 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10025717 [exp] 96 / 9e-21 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [poplar] [flax] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.002G207700.1 pacid=42778122 polypeptide=Potri.002G207700.1.p locus=Potri.002G207700 ID=Potri.002G207700.1.v4.1 annot-version=v4.1 ATGGTGGAGATGACGATGAACAAGGAAACATCACACTGGTGGTGGTTTGACAGTCATTATACCTCAAGTGGATCTCCATGGCTACAATCTACTCTCGCTG AGCTAGACAAGAAGACAAAGTCAATGCTGAAACTGATAGAGCCAGATGCAGATTCTTTTGCTCAACGTGCAGAGATGTATTACAAGAAACGGCCTGAGCT AATTAGCATGGTTGAAGATTTTTACAGGGCACATCGCTCATTAGCTGAGCGATATGACCAACTTAAGTCTGACTCTGGAAATCGCCTCCTGGCAACATTT GGGTTGCCATTTTCAACCAAACATCGACCTGAGAAGTTATTGAGTGTGGAGATACATCAAACATATGGCAGCCACTCCGAGATTTACGACGCTGAGGATT TCGCTGAGTCTGAAGTAGATGACCCTGAACAAGACCAAATTCAAGTTGATGAAGAATTGGAAGAAATTGAGACACCTGAAGAAAAGAAAGAAACCCATGC TGAAGACTCTGCTGAGTCTGAAGTAGATGACCCTGAACAAGATCAAATTCAAGTTGATGAAGAATTGGAAGAACTTGAGATAGATGAAGAAAAGAAACAA ACCCACATTGAGGACTCTGCTGAGTCGGAAGTAGATGACCCTGAACAAGATCAAATTGGTGAAGAATTGGAAGAAATTGAGACACGTGAAGAAAAGAAAG ATGTTGACGTTTGTACCATGTATAATGCTGAAGTGACGAAGTTGAAAGAAGAAATAGAAAGACATGAGGTAGAGAAGAGGATTTACAAGGGTTATCTTTT GCAGAGAGACGAGGAGATGAGAGAACAAAAGAAAGAAATTCCAGCCAATGAAGGAATGAGAGAAGCTGACATTTCAAAGGTTGTGTACAATGTTGAAGTG ATGAAGTTGAGGGAAGAAATAGAAAGGCTTAGGGAAGCGAAGACGATTAGCAAGGATCATGTTTTGCAGAAACATGAAGAGAAGAGAGAAGAAAAGAATG AAACTCAAGTCAACGAAGGAATGAAAGAAGTTGAATTTTCAAGTGTTTTGTACGATTTTGAAGTGATGAAGTTGAGGGAAGAAATAGAAGGGCTTGGGGA AGAGAACAAGATTTACGAGGAGCTACTTTTGCAGAAAGATGAAGAGAAACGAGAAGTAATAAGACAGCTAAGTTTAACAGTTGAAGTGTTGAAGTTGGAG AATACGAAGCTGAGGAAGTGTGTAGCTAGAGACTCCCACAAAAAAGGAAGCCATTTCACAGTCGAGAAGCTGAAGGATGTATTTCTTGGGAAGCTTTTTA ATGCAACTTCAAAGTCTCATAGTAGAGTCCAAGCTCTGTAG
AA sequence Show only first row Show all	>Potri.002G207700.1 pacid=42778122 polypeptide=Potri.002G207700.1.p locus=Potri.002G207700 ID=Potri.002G207700.1.v4.1 annot-version=v4.1 MVEMTMNKETSHWWWFDSHYTSSGSPWLQSTLAELDKKTKSMLKLIEPDADSFAQRAEMYYKKRPELISMVEDFYRAHRSLAERYDQLKSDSGNRLLATF GLPFSTKHRPEKLLSVEIHQTYGSHSEIYDAEDFAESEVDDPEQDQIQVDEELEEIETPEEKKETHAEDSAESEVDDPEQDQIQVDEELEELEIDEEKKQ THIEDSAESEVDDPEQDQIGEELEEIETREEKKDVDVCTMYNAEVTKLKEEIERHEVEKRIYKGYLLQRDEEMREQKKEIPANEGMREADISKVVYNVEV MKLREEIERLREAKTISKDHVLQKHEEKREEKNETQVNEGMKEVEFSSVLYDFEVMKLREEIEGLGEENKIYEELLLQKDEEKREVIRQLSLTVEVLKLE NTKLRKCVARDSHKKGSHFTVEKLKDVFLGKLFNATSKSHSRVQAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47920			Kinase interacting (KIP1-like)...		Potri.002G207700 [exp]	0	1
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Potri.009G054400 [exp]	6.63	0.7926
AT3G20490			unknown protein		Potri.011G139200 [exp]	9.48	0.7757
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Potri.009G132000 [exp]	10.67	0.7941
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.008G010800 [exp]	11.57	0.8369
AT5G59970			Histone superfamily protein (....		Potri.007G013500 [exp]	12.68	0.8136	HFO909
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.010G197200 [exp]	13.41	0.8345
AT5G40460			unknown protein		Potri.017G070000 [exp]	16.43	0.7729
AT3G14740			RING/FYVE/PHD zinc finger supe...		Potri.011G103100 [exp]	17.88	0.8245
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.014G085900 [exp]	21.21	0.7949
AT5G42655			Disease resistance-responsive ...		Potri.002G131500 [exp]	29.66	0.7716

Compare expression of checked genes

Potri.002G207700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.