Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TIR1.1,FBL2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62980 936 / 0 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT4G03190 797 / 0 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT1G12820 699 / 0 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G26810 671 / 0 AFB2 auxin signaling F-box 2 (.1) AT5G49980 561 / 0 AFB5 auxin F-box protein 5 (.1) AT4G24390 547 / 0 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT2G39940 310 / 4e-98 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G15475 69 / 5e-12 F-box/RNI-like superfamily protein (.1) AT5G23340 66 / 2e-11 RNI-like superfamily protein (.1) AT1G47056 66 / 3e-11 VFB1 VIER F-box proteine 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G134800 [exp] 1061 / 0 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 688 / 0 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 684 / 0 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.004G033900 [exp] 655 / 0 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 645 / 0 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G102700 [exp] 582 / 0 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.005G159300 [exp] 581 / 0 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.010G192900 [exp] 296 / 3e-92 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.008G064400 [exp] 291 / 1e-90 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035160 [exp] 691 / 0 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10018426 [exp] 640 / 0 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10020086 [exp] 639 / 0 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10006738 [exp] 639 / 0 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10035161 [exp] 596 / 0 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10018425 [exp] 591 / 0 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 590 / 0 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10031991 [exp] 484 / 7e-168 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10011260 [exp] 394 / 2e-133 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10028265 [exp] 301 / 2e-94 AT2G39940 816 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G207800.2 pacid=42778088 polypeptide=Potri.002G207800.2.p locus=Potri.002G207800 ID=Potri.002G207800.2.v4.1 annot-version=v4.1 ATGCCGAACAAGGCGAGTACGTTCCCGGAGGAAGTGCTAGAGCATGTGCTCTCGTTTATTACAAACGACAAAGACAGGAACGCCGTATCGGTGGTGTGCA AGTCGTGGTACGAGATAGAGCGGTGGTGCAGGAAGAGAATATTTGTTGGTAACTGTTATGCGGTGAGGCCTGATATGGTTATAAGGAGGTTTCCGGAGCT AAGATCGGTGGAGCTCAAAGGGAAGCCACACTTTGCGGACTTTAATTTGGTGCCTGACGGTTGGGGAGGTTACTTTTACCCATGGATAGCGGCGTTGGCT ACCGCCTATCCTTGGTTGGAAGAGATTAGGTTGAAGAGGATGGTGATTTCCGACGAGAGTTTGGAGTTTATTGCTAAGAGTTTTAAAAATTTTAAGGTTT TGGTGCTTTCGTCTTGTGAGGGTTTCTCTACGGATGGACTTTCTGCCATTGCAGCCGATTGCAGGAATCTGAGGGAGCTGGATTTACGAGAGAGTGAGGT GGATGATCCAAGTGGGCAGTGGTTGAACAGTTTTCCTGACTCGTTTACATCACTGGTCTCTCTTAATATTTCCTGCTTAGGGGCTGAGCTGAGTTTCTCA GCTCTGGAGCGCCTGGTTGGCCAGTGTCCTGATCTAAAGAATCTTCAGCTCAACCATGCTGTGCCCGTTGAGAGGCTTGCTAAACTTATTCGCCAAGCAC CACAACTTGTTGAATTGGGCACAGGTGAGTTCTCGGCTAAGTTGCAGCCTGAAATCTTCTCAAACCTGGCTGGAGCTTTTTCTGTGTGTAAAGAACTGAG GAGTCTATCTGGGTTTTGGGATGTAAATCCAGCTTACCTTCCAGCAGTTTATCCTGTCTGTTCTGGCTTAACATCACTGAACTTGAGATATGCCAATATA CAAAGCGCTGATCTCATTAAACTTGTCAGTCAATGTTCGAATCTGCAGCGTTTATGGGTGCTGGATTACATTGAAGACGTTGGACTTGAAGCTCTTGCAG CATGTTGCAAGGACCTGACAGAGTTGAGGGTGTTTCCATCTGACCCATTTGCTGCAGAACCAAATGTATCCTTGACAGAAAGGGGCCTTGTCTCTGTCTC TGAAGGCTGTCCTAAGCTTCAGTCAGTTCTGTACTTTTGCCGTCAAATGACTAATGCTGCTCTAGTTACAGTAGCAAAGAACCGTCCAAGCATGACCTGC TTCCGTCTTTGTATTATTGAACCTCAGGCTCCTGATTACCAAACACTTCAGCCTCTGGATTTGGGTTTTGGAGCCATTGTTGAAAACTACAAGGATCTCC GGCGTCTTTCCCTCTCAGGTCTACTGACTGATCGTGTGTTTGAGTACATTGGAACTTATGGAAAAAAAATAGAGATGCTATCTGTGGCATTTGCTGGCGA TAGTGATCTGGGACTCCACCATGTGCTGTCTGGGTGTGAAAGGCTTTGCAAACTTGAAATTAGGGACTGTTCCTTTGGGGATAAGGCTCTTTTGGCCAAT GCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCTTCTTGCTCAGTGAGTTTTGGAGCATGTAAGCTGCTAGGTCAGAAGATGCCTAGGCTCAATG TTGAAGTTATTGATGAGAGGGGACCTCCAGAATCGAGGCCGGAAAGCTGCCCTGTTGAGAAGCTTTACATATACAGAACCATTGCAGGACCTAGGCTTGA CATGCCTGGATTTGTTAGGACTATGGATGCAGATTCTGTGTCAAGGTTTTGTTGA
AA sequence Show only first row Show all	>Potri.002G207800.2 pacid=42778088 polypeptide=Potri.002G207800.2.p locus=Potri.002G207800 ID=Potri.002G207800.2.v4.1 annot-version=v4.1 MPNKASTFPEEVLEHVLSFITNDKDRNAVSVVCKSWYEIERWCRKRIFVGNCYAVRPDMVIRRFPELRSVELKGKPHFADFNLVPDGWGGYFYPWIAALA TAYPWLEEIRLKRMVISDESLEFIAKSFKNFKVLVLSSCEGFSTDGLSAIAADCRNLRELDLRESEVDDPSGQWLNSFPDSFTSLVSLNISCLGAELSFS ALERLVGQCPDLKNLQLNHAVPVERLAKLIRQAPQLVELGTGEFSAKLQPEIFSNLAGAFSVCKELRSLSGFWDVNPAYLPAVYPVCSGLTSLNLRYANI QSADLIKLVSQCSNLQRLWVLDYIEDVGLEALAACCKDLTELRVFPSDPFAAEPNVSLTERGLVSVSEGCPKLQSVLYFCRQMTNAALVTVAKNRPSMTC FRLCIIEPQAPDYQTLQPLDLGFGAIVENYKDLRRLSLSGLLTDRVFEYIGTYGKKIEMLSVAFAGDSDLGLHHVLSGCERLCKLEIRDCSFGDKALLAN AAKLETMRSLWMSSCSVSFGACKLLGQKMPRLNVEVIDERGPPESRPESCPVEKLYIYRTIAGPRLDMPGFVRTMDADSVSRFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.002G207800 [exp]	0	1	Pt-TIR1.1,FBL2
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.006G203500 [exp]	1.00	0.9060
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	2.00	0.8845	Pt-BRI1.2
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	7.34	0.8756	Pt-BRI1.1
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G217700 [exp]	14.00	0.8411
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.002G259900 [exp]	14.49	0.8215
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G291700 [exp]	16.12	0.8220
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	18.43	0.8673
AT1G67400			ELMO/CED-12 family protein (.1...		Potri.010G060700 [exp]	19.07	0.8071
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Potri.017G061600 [exp]	19.28	0.8751	FBL4,IPS1.1
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.007G112600 [exp]	21.44	0.7924

Compare expression of checked genes

Potri.002G207800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.