Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62770 596 / 0 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) AT3G56440 471 / 1e-165 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT2G40810 469 / 6e-165 ATATG18C homolog of yeast autophagy 18C (.1.2) AT5G05150 328 / 1e-109 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT4G30510 117 / 2e-30 ATATG18B ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) AT2G47720 46 / 2e-06 unknown protein AT1G54710 47 / 2e-05 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1) AT1G03380 47 / 2e-05 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132300 [exp] 706 / 0 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.005G026600 [exp] 494 / 5e-175 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.013G018400 [exp] 492 / 4e-174 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.019G062800 [exp] 483 / 6e-170 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.018G101200 [exp] 140 / 2e-37 AT4G30510 432 / 2e-152 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) Potri.001G417000 [exp] 47 / 3e-05 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.011G132700 [exp] 46 / 4e-05 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.005G040300 [exp] 45 / 8e-05 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.013G028200 [exp] 45 / 0.0001 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041353 [exp] 652 / 0 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036577 [exp] 650 / 0 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10031500 [exp] 497 / 8e-175 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10015178 [exp] 493 / 3e-173 AT3G62770 489 / 4e-172 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10004501 [exp] 489 / 3e-172 AT3G62770 493 / 5e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10029900 [exp] 474 / 3e-166 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10003694 [exp] 434 / 6e-151 AT2G40810 580 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10001580 [exp] 434 / 3e-150 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10036618 [exp] 49 / 6e-06 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10023022 [exp] 45 / 8e-06 AT3G62770 46 / 7e-07 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G207865.1 pacid=42777214 polypeptide=Potri.002G207865.1.p locus=Potri.002G207865 ID=Potri.002G207865.1.v4.1 annot-version=v4.1 ATGGCTACTCTCTCAGCGTACTCCTCTCCTCCATGGCCTAACCCGGACCCTAACCCGGAACTTCTGGCCCCTCAAGATGAACTCGATTCCCAAACTCAGT CCCCGTCTGAGCCTCAATCTTACGGTTCCCTCTCTTCTACTATGCCTCCAAACCCTAACCCTAACCCTAACCCTAACCCTTTTTCCAATTACAACACCTC TGTATCTTCTCAGCCTCAATCAACCTCACAGCCGCCTCCGATTTCTCTTCTCCATGTCTCCTTCAACCAGGATTCTGGGTGTTTCGCGGCAGGAACTGAC CACGGGTTTCGGATCTACAACTGCGACCCCTTCCGCGAGATCTTCCGTCGCGACTTCGATGGCAGCGGAAATAGTGGCGGCGGGATTGGAGCGGTTGAGA TGCTTTTTAGATGCAATGTTTTAGCTCTTGTTGGTGGTGGACCTGACCCTCAGTACCCTCCGAACAAGGTCATGATCTGGGACGACCATCAGAGTCGATG CATCGGCGAGCTATCGTTTCGGTCTGAGGTCCGGTCCGTGAAGCTAAGACGGGATAGGATTATTGTTGTTTTGGAGCAGAAAATATTTGTTTATAACTTT GCGGATTTGAAGCTTTTGCATCAGATTGAAACCATTGCGAATCCGAAAGGGCTCTGTGCGGTTTCGCATGGGGCAGGATCGTTAGTTTTGGTTTGTCCAG GATTGCAGAAAGGTCAGGTTAGGGTGGAGCATTACGCTTCAAAACGAACTAAGTTTATTATGGCGCATGATTCGAGGACTGCGTGTTTTGCTCTCACGCA GGATGGGCAGTTGCTGGCTACTGCTAGCACTAAGGGTACTCTCGTTCGGATTTTCAATACAGCTGATGGCACCCTGCTTCAAGAGGTGAGGAGGGGTGCA GATAGAGCAGAAGTTTATAGTTTGGCATTTTCTTCAACTGCCCAGTGGCTAGCTGTCTCAAGTGATAAGGGCACTGTCCATGTCTTCAGCCTTAAGATTA ATCCAGGATCTCCAGTGATTGACAGGTCACAGAGCACAAATGAGCCTAATCTTGCTCTTACATCACCTGCCTCTTCATTATCTTTCTTCAAAGGAGTTTT ACCAAAGTATTTCAGCTCAGAGTGGTCGGTGGCTCAGTTTCACTTAGTTGAGGGTTCTCAGTACATTGTTGCTTTTGGTCACCAAAAGAATACGGTGGTT ATTCTTGGTTTGGATGGGAGTTTCTATCGTTGTCAGTTTGATCCTGTGAATGGTGGAGAGATGACTCAGCTGGAATATCACAACTTCTTGAAGCCAGAAG CAGCCTTTTAA
AA sequence Show only first row Show all	>Potri.002G207865.1 pacid=42777214 polypeptide=Potri.002G207865.1.p locus=Potri.002G207865 ID=Potri.002G207865.1.v4.1 annot-version=v4.1 MATLSAYSSPPWPNPDPNPELLAPQDELDSQTQSPSEPQSYGSLSSTMPPNPNPNPNPNPFSNYNTSVSSQPQSTSQPPPISLLHVSFNQDSGCFAAGTD HGFRIYNCDPFREIFRRDFDGSGNSGGGIGAVEMLFRCNVLALVGGGPDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNF ADLKLLHQIETIANPKGLCAVSHGAGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRTACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGA DRAEVYSLAFSSTAQWLAVSSDKGTVHVFSLKINPGSPVIDRSQSTNEPNLALTSPASSLSFFKGVLPKYFSSEWSVAQFHLVEGSQYIVAFGHQKNTVV ILGLDGSFYRCQFDPVNGGEMTQLEYHNFLKPEAAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.002G207865 [exp]	0	1
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.018G064200 [exp]	1.00	0.9390
AT1G12450			SNARE associated Golgi protein...		Potri.003G117400 [exp]	1.41	0.8688
AT1G48900			Signal recognition particle, S...		Potri.001G253500 [exp]	2.82	0.8491	SRP.4
AT5G01990			Auxin efflux carrier family pr...		Potri.016G141700 [exp]	3.46	0.8358
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Potri.014G195800 [exp]	6.48	0.7820	CAD1.1
AT5G10030	bZIP	OBF4, TGA4	OCS ELEMENT BINDING FACTOR 4, ...		Potri.007G079900 [exp]	8.66	0.8607	STGA1.2
AT4G32020			unknown protein		Potri.018G022400 [exp]	9.38	0.8196
AT1G52343			unknown protein		Potri.003G055200 [exp]	10.48	0.8383
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Potri.002G051900 [exp]	10.81	0.7825	HMCA902
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Potri.010G191800 [exp]	11.61	0.8069

Compare expression of checked genes

Potri.002G207865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.