Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02960 207 / 7e-61 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005904 [exp] 88 / 5e-19 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G208058.1 pacid=42779052 polypeptide=Potri.002G208058.1.p locus=Potri.002G208058 ID=Potri.002G208058.1.v4.1 annot-version=v4.1 ATGTGGCGGCAAAACTCTTTCCCGGGAAAACCGGATTCTGATCATAGCATTTCTGACGAGGAAGATTTTGACGGAGATTTGAGAGAAAATTGTGTTTCTT TGACTGGGAATACACTGAAAGAGGAAGGATGGGAACTTCAGTCACGACTGGATATCCTTCGAGGTGTGAATGCGCAAAGTTGTGGAAATAGAATTAGCAA TTTAGCGCGTGAGGCATGTAAGCAAACAAGTTTCAAAATCGACGATGAGCTCGAGATGCCTGATTTCCCTAATGAGGGTACTTTCTTTTTCTCCCCTAGA AAAGGATCTGCACATAACTCTAAAGATGAAGTCGATTGTGATGACGAGGATAAATATGCATCGTTGGAATATTCAATTATGTCTAGTGACACAAAGTCTG ATAAAGGTAATAATCTTCGAGGTTTTGGAAGGGAGAAGCAAGCTGAAGCATGCACACGGTCCCTGGTGAATAAAGAGGCTGAGACACTAATCAATTTGAA TGAGAACGCACTCTCTTCCCATTCTGCTTATTCTAAAGGAAACAAATCTCATAAAGGTATCAGAGGCAAAGCCAAGCCAAAATTTGCTTTCCATTTTCAG TCACACAAAGATGGACTTTATCAACCTTTTATTTCTAAAGATAAAAATCCTATCACATTCAAGGTTGATGATGGGCCTGAAAGATCGGAAACAATTGAGA ATAAAAATCTTGAAAATTTAAGTCCTGTGTTTCATGAGGAATTTTTTGGAGAGAATGTGAACCTGTCAGAGATTGAGCCTGTGGAAGCTGAAGCTCTTGG CAATGGCTTTGTTGACCATTCAATGGCTGAAATTTTAGATGGCCTTCAGGATAAGAATATTCAGCCAAGGGGAAATTCTAAATGGTATAGCAGAACAAAA TCAAGAAGGGGACAGATAGTCATGAAGAGAAGTATGTCTTTATTGGGAGATAGAATCATTGATGATGAAGACCAACCTGAGCTGATGGCTAGTGGATCAT CTAGTGATGACGAGACCAATCATCAGAACATAAACCTTGCTGACCTGGAGATGAAGAAGCGAACTATTGCTGATCGCTTTCAGGAAGCTTTAGCTGCTAC CTCTGTGAGTGATGAAGGGGTCATTTCCGCAGCAGCTAAACCATCAGGTATTGGTTTGTTTGGGAAGTTGCAGCAGGTCATGCAGACTGAAAAGGAAAGA GATTCTGAGTTTCTGAAAAAGCTACAGATGGGAGCAAGCCCAAATAGTGAACCATGCTCCATATTTGCAAAGATCCTGTCCAGATGCTTTGATGCAAAGC TGATAGTTTGTCATTGCACTTTTGGTGAGAATATAAAGGATTCCCAGTCACCAGAGAGCTCCAAAACATTTGTTGATAGAGGAAGGATTAGGACGGTTAT TTTTAGTCCAAGAGTTTGCAGCAATGTTGACCTTGATTTAGGGAACTTGATTTGTATTTACCCTCCCTGGAAGGAGGTTCAAGTAATTGGGAGTGATGAA TTTGTTATTTTAACAACATATTTCTCCCACGTTTCAGCGTGA
AA sequence Show only first row Show all	>Potri.002G208058.1 pacid=42779052 polypeptide=Potri.002G208058.1.p locus=Potri.002G208058 ID=Potri.002G208058.1.v4.1 annot-version=v4.1 MWRQNSFPGKPDSDHSISDEEDFDGDLRENCVSLTGNTLKEEGWELQSRLDILRGVNAQSCGNRISNLAREACKQTSFKIDDELEMPDFPNEGTFFFSPR KGSAHNSKDEVDCDDEDKYASLEYSIMSSDTKSDKGNNLRGFGREKQAEACTRSLVNKEAETLINLNENALSSHSAYSKGNKSHKGIRGKAKPKFAFHFQ SHKDGLYQPFISKDKNPITFKVDDGPERSETIENKNLENLSPVFHEEFFGENVNLSEIEPVEAEALGNGFVDHSMAEILDGLQDKNIQPRGNSKWYSRTK SRRGQIVMKRSMSLLGDRIIDDEDQPELMASGSSSDDETNHQNINLADLEMKKRTIADRFQEALAATSVSDEGVISAAAKPSGIGLFGKLQQVMQTEKER DSEFLKKLQMGASPNSEPCSIFAKILSRCFDAKLIVCHCTFGENIKDSQSPESSKTFVDRGRIRTVIFSPRVCSNVDLDLGNLICIYPPWKEVQVIGSDE FVILTTYFSHVSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02960			unknown protein		Potri.002G208058 [exp]	0	1
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.003G001500 [exp]	1.41	0.8866	CLC.3
AT3G03890			FMN binding (.1.2)		Potri.013G057700 [exp]	3.31	0.8172
AT2G22600			RNA-binding KH domain-containi...		Potri.007G012000 [exp]	4.89	0.8306
AT1G73320			S-adenosyl-L-methionine-depend...		Potri.017G153900 [exp]	5.74	0.8417
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.018G017000 [exp]	5.91	0.8292
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.005G140200 [exp]	8.24	0.8064	SDG916,Pt-CLF.2
AT2G19930			RNA-dependent RNA polymerase f...		Potri.007G081300 [exp]	8.36	0.8125
AT1G66590		ATCOX19-1	A. THALIANA CYTOCHROME C OXIDA...		Potri.001G187200 [exp]	8.77	0.8254
AT3G49000			RNA polymerase III subunit RPC...		Potri.015G144900 [exp]	8.83	0.8286
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.002G152900 [exp]	9.48	0.7813

Compare expression of checked genes

Potri.002G208058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.