Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47890 276 / 6e-91 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT2G33500 172 / 5e-50 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT3G07650 139 / 1e-37 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT1G28050 134 / 2e-35 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT5G48250 110 / 3e-27 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT2G24790 91 / 1e-20 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT4G15250 91 / 2e-20 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT5G24930 91 / 4e-20 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT1G68190 90 / 6e-20 CO B-box zinc finger family protein (.1) AT3G21880 90 / 8e-20 CO COL12 B-box type zinc finger protein with CCT domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G134601 [exp] 327 / 5e-111 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.001G061800 [exp] 133 / 1e-34 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 127 / 2e-32 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.001G323500 [exp] 121 / 1e-30 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G170600 [exp] 118 / 1e-29 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.002G214500 [exp] 100 / 3e-23 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.008G125200 [exp] 97 / 4e-22 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.017G107500 [exp] 93 / 6e-21 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.018G013800 [exp] 92 / 2e-20 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040900 [exp] 397 / 1e-137 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10005936 [exp] 186 / 8e-58 AT2G47890 126 / 3e-35 B-box type zinc finger protein with CCT domain (.1.2) Lus10002578 [exp] 124 / 2e-31 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 124 / 2e-31 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10041096 [exp] 96 / 4e-22 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10031584 [exp] 91 / 1e-19 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10015098 [exp] 89 / 2e-19 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10026909 [exp] 89 / 2e-19 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10020105 [exp] 86 / 1e-18 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10035257 [exp] 84 / 7e-18 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.002G208100.5 pacid=42779049 polypeptide=Potri.002G208100.5.p locus=Potri.002G208100 ID=Potri.002G208100.5.v4.1 annot-version=v4.1 ATGAAGCCCAGACAACAACAAAAAAGGCTTTGTGATTACTGTAATGACACCACAGCTCTCCTATATTGCAGAGCTGACTCAGCCAAGCTTTGTTTCTCTT GTGATCATGAAGTCCACTCAACGAACCAGCTCTTCTCCAAGCACACTCGTTCACTGCTCTGTGATGCCTGTCACGCATCCCCTGTATCAATCTTCTGTCA AACAGAGCACTCTGTTTTTTGCCAAAACTGCGACTGGGAAAGACACAGTCTTTCTTCTTTGTCTTCAACACACATTCGTAGGCCGATTGAGGGTTTTACT GGGTGTCCTTCAGGGAATGAATTGATGACAATTTTGGGGTTTGAAGATCTGGGTCTCAAAAAGTCTCTGTTTTTTAGTGAAGAAAGTGATGGGTTTTTGG GGTCTGAACTTGATGATGGCTGTTCGGATTTGTTTCTTTGGGATAGCCCTGCTGTTTGCATTGATGATTTGATAGTTTCCAGTGATTCGGGTTCAAATTT CCAGACTTTAGGAGTCCCTCCTTTGCCTAAGAATCGTAATGCTGCTTGTGGGCAGCACAAGGAAGAAATCCTTTGTCAGCTTCGTGAACTAGTGAGATTG AAGCCTGATCCATATGGAAATGCAGACATTGACCCTGCTAATATCCTCCAATCACTGGATGCTGATCCGCAGCCACCGAATTTAAATACAATTGGTGATC CTGGGGCATTCACTTCATACAAGGAAAATCTGCCCGATTGGCTTGCTGATTATGGTGAAGCTGCAAATCAAGTTCTTTTTCTTTCTACATTACCAAGTAG CAACTTTGAGGAAAGTTGTGCAGTTCCTGACAAAGAGTTCAATATTATTGGTAGTGCAAGTCATGTCCATGATGATCATGCAGCAGAGCCACAGCATCTT ACAATTGAAACATTACCAGCTCTCCCAAATGTTGTGACACATGAATTAAACAGCCAGGAGAGAGATTCTGCTATTTCACGATACAAGGAGAAGAAGAAAA CAAGGAGGTACAGCAAACATATCAGGTATGAATCCCGCAAGGTTCGGGCAGAAGGCAGAACAAGAATTAGGGGACGTTTTGCTAAGATGGATCATTGA
AA sequence Show only first row Show all	>Potri.002G208100.5 pacid=42779049 polypeptide=Potri.002G208100.5.p locus=Potri.002G208100 ID=Potri.002G208100.5.v4.1 annot-version=v4.1 MKPRQQQKRLCDYCNDTTALLYCRADSAKLCFSCDHEVHSTNQLFSKHTRSLLCDACHASPVSIFCQTEHSVFCQNCDWERHSLSSLSSTHIRRPIEGFT GCPSGNELMTILGFEDLGLKKSLFFSEESDGFLGSELDDGCSDLFLWDSPAVCIDDLIVSSDSGSNFQTLGVPPLPKNRNAACGQHKEEILCQLRELVRL KPDPYGNADIDPANILQSLDADPQPPNLNTIGDPGAFTSYKENLPDWLADYGEAANQVLFLSTLPSSNFEESCAVPDKEFNIIGSASHVHDDHAAEPQHL TIETLPALPNVVTHELNSQERDSAISRYKEKKKTRRYSKHIRYESRKVRAEGRTRIRGRFAKMDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47890	CO	COL13	B-box type zinc finger protein...		Potri.002G208100 [exp]	0	1
AT1G51100			unknown protein		Potri.011G132900 [exp]	22.44	0.8852
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Potri.014G149800 [exp]	26.15	0.8469
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.014G052000 [exp]	121.67	0.8349
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.010G238300 [exp]	135.22	0.8310
AT1G18010			Major facilitator superfamily ...		Potri.012G005100 [exp]	165.97	0.7958
AT2G20540		MEF21	mitochondrial editing factor ...		Potri.001G471600 [exp]	193.27	0.8212
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.009G080500 [exp]	241.49	0.7975

Compare expression of checked genes

Potri.002G208100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.