Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02970 573 / 0 ATWEE1, WEE1 WEE1 kinase homolog (.1) AT4G19110 102 / 4e-23 Protein kinase superfamily protein (.1.2.3) AT5G45430 96 / 7e-21 Protein kinase superfamily protein (.1.2) AT1G76040 95 / 2e-20 CPK29 calcium-dependent protein kinase 29 (.1.2) AT3G59410 94 / 6e-20 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) AT3G10540 89 / 1e-18 3-phosphoinositide-dependent protein kinase (.1) AT1G49580 89 / 2e-18 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G20860 88 / 2e-18 ATNEK5 NIMA-related kinase 5 (.1) AT3G19100 88 / 4e-18 Protein kinase superfamily protein (.1) AT3G12200 87 / 4e-18 ATNEK7 NIMA-related kinase 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132400 [exp] 758 / 0 AT1G02970 531 / 0.0 WEE1 kinase homolog (.1) Potri.003G101600 [exp] 104 / 5e-24 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G046100 [exp] 95 / 1e-21 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.007G128300 [exp] 95 / 3e-20 AT3G59410 1610 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) Potri.001G018700 [exp] 94 / 3e-20 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 91 / 2e-19 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.008G195800 [exp] 91 / 4e-19 AT5G18700 1833 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.008G166500 [exp] 87 / 6e-19 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.002G247500 [exp] 88 / 2e-18 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041354 [exp] 630 / 0 AT1G02970 553 / 0.0 WEE1 kinase homolog (.1) Lus10036576 [exp] 607 / 0 AT1G02970 541 / 0.0 WEE1 kinase homolog (.1) Lus10038123 [exp] 100 / 2e-22 AT4G19110 555 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10008303 [exp] 96 / 1e-20 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012799 [exp] 93 / 1e-19 AT5G18700 960 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10033278 [exp] 92 / 2e-19 AT4G19110 620 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10029657 [exp] 90 / 9e-19 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) Lus10033979 [exp] 89 / 1e-18 AT5G18700 503 / 4e-162 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10042698 [exp] 87 / 7e-18 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1) Lus10033108 [exp] 86 / 1e-17 AT5G12480 598 / 0.0 calmodulin-domain protein kinase 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G208251.1 pacid=42777838 polypeptide=Potri.002G208251.1.p locus=Potri.002G208251 ID=Potri.002G208251.1.v4.1 annot-version=v4.1 ATGAAGAGGAATACCCTAACGAAGAGAAGCTACAGGAAGAGTAATAGGAGGAGGGAGAGTAGCAGCACCGCCAAAATGAAGCGCCCGTTAGTAAGTCACT TGCAACAAGGTCAGCACCACCAAATCCAATCATCCTCTTCCACCTCAGCAGCATCATCGTCTCGATTCCAGAACCTTTTGGACTCCGAACTAACCGATCC TCAGCTGGTTGCCGAGGATGTTGATGAAAGAGATTTCATCCTCAGCCAGGACTTCTTCTGCACTCCAGATTATATCACACCAGACAATCAAAATCTACTT TGCAGTTCTGATTGCAACAAGGAAAACATTCAGTGCCCCAAATCACCGGAGAAAGTGAACACTGCCAAAATAAAAAAGCTTCGACAGGTTCATCCTCTCA GCCCTACATTGTCGGACCAGCAACAAATTGTGGATATTGGGAAAGATAACATCAATTCAGAGGAAATGATGATTGAGAAAACATCAACTGCTGAAATAAA GAAGCCTCAAAATTATGTATCACAATCTGCTGTTTATTTACGCTGTCGGGTCATGCCCCCTCCTTGCATCAAGAACCCATATTTAATGGATGCTTCAGAA GTGGGTATAGATCCATTTGGCAATCAGAGATCAAAATGCGCAGAATTTTTGCCTGCATTTGTCCATGGAGATGGCCTATCACGCTATCACATAGATTTTC ACGAGATCCAGCAAATTGGAACTGGGAACTTCAGTTGTGCTTTCAAAGTTCTGAAAAGAATCGATGGTTGCTTTTATGCGGTGAAGCATAGCACAAGGCA GTTGCATCAGGAGCCAGAAAGGAGGAAAGCATTGATGGAGGTTCAAGCTCTAGCAGCTTTAGGATGTCATGAGAACATTGTTGGATACTACTCTTCTTGG TTTGAAAATGAGCAACTCTACATTCAGATGGAACTCTGTGATTGCAGCTTATCTGTCAATAGATCTTCCAAATCCTTAACAGAGGGAGAAGCACTGCAAG TCTTGTTTCAGATTGCAAAGGCATTGCGGTTTATTCATGAGAGAGGAATAGCTCACCTAGATGTGAAACCTGATAATATTTATGTCAAGAATGGAGTTTA TAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGACCAGAGTCTACCAGTTGAAGAGGGTGATGCACGTTATATGCCTCAAGAGATCCTGAATGAGAAC TACAATTATCTTGACAAAGTTGACATCTTTTCCTTGGGAGCAGCTATTTATGAGCTTATTAGGGGGTCAACTTTGCCACAATCAGGATACCAGTTTATGA ACCTTAGGGAGGGAAAACTGCCCCTCCTTCCTGGTCATTCGTTGCAACTTCAAAACTTACTAAAGGTCATGGTCGATCCTGATCCCATCCGGAGGCCATC TGCTAAGGAATTAGTGGAAAATCCAATATTTGATAAGGTTCAAAGAAATCTTAAATCCCAAGCAAAAGCTTAA
AA sequence Show only first row Show all	>Potri.002G208251.1 pacid=42777838 polypeptide=Potri.002G208251.1.p locus=Potri.002G208251 ID=Potri.002G208251.1.v4.1 annot-version=v4.1 MKRNTLTKRSYRKSNRRRESSSTAKMKRPLVSHLQQGQHHQIQSSSSTSAASSSRFQNLLDSELTDPQLVAEDVDERDFILSQDFFCTPDYITPDNQNLL CSSDCNKENIQCPKSPEKVNTAKIKKLRQVHPLSPTLSDQQQIVDIGKDNINSEEMMIEKTSTAEIKKPQNYVSQSAVYLRCRVMPPPCIKNPYLMDASE VGIDPFGNQRSKCAEFLPAFVHGDGLSRYHIDFHEIQQIGTGNFSCAFKVLKRIDGCFYAVKHSTRQLHQEPERRKALMEVQALAALGCHENIVGYYSSW FENEQLYIQMELCDCSLSVNRSSKSLTEGEALQVLFQIAKALRFIHERGIAHLDVKPDNIYVKNGVYKLGDFGCATLLDQSLPVEEGDARYMPQEILNEN YNYLDKVDIFSLGAAIYELIRGSTLPQSGYQFMNLREGKLPLLPGHSLQLQNLLKVMVDPDPIRRPSAKELVENPIFDKVQRNLKSQAKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.002G208251 [exp]	0	1
AT3G12170			Chaperone DnaJ-domain superfam...		Potri.006G056400 [exp]	1.73	0.9196	Pt-ATJ6.1
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.008G097600 [exp]	1.73	0.9506	Pt-RGP3.4
AT1G29630			5'-3' exonuclease family prote...		Potri.011G077001 [exp]	3.46	0.9304
AT4G10630			Glutaredoxin family protein (....		Potri.001G448300 [exp]	6.92	0.9104
AT4G15790			unknown protein		Potri.008G207500 [exp]	7.48	0.9138
AT1G80190		PSF1	partner of SLD five 1 (.1)		Potri.006G142300 [exp]	7.48	0.8915
AT1G04650			unknown protein		Potri.003G175300 [exp]	8.36	0.9174
AT5G18610			Protein kinase superfamily pro...		Potri.010G215100 [exp]	11.83	0.9065
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.005G218400 [exp]	15.65	0.8841
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Potri.014G121000 [exp]	16.73	0.9018	PRL.2

Compare expression of checked genes

Potri.002G208251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.