Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50700 311 / 3e-100 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G03840 309 / 1e-98 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G66730 308 / 2e-98 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT5G44160 306 / 3e-98 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT1G55110 294 / 9e-94 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT2G02080 293 / 2e-92 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT5G03150 292 / 2e-92 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT3G45260 290 / 5e-92 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G14580 289 / 2e-91 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT3G13810 289 / 5e-91 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132700 [exp] 793 / 0 AT1G03840 232 / 2e-69 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.013G019200 [exp] 477 / 4e-164 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.005G027200 [exp] 476 / 2e-163 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.006G129300 [exp] 320 / 4e-103 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.003G036900 [exp] 319 / 5e-102 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.016G088500 [exp] 314 / 1e-100 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.001G069948 [exp] 313 / 2e-100 AT3G50700 334 / 5e-110 indeterminate(ID)-domain 2 (.1) Potri.017G017100 [exp] 310 / 1e-99 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 310 / 2e-99 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041356 [exp] 410 / 1e-132 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10036573 [exp] 367 / 7e-121 AT1G03840 292 / 2e-93 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10010820 [exp] 306 / 1e-100 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10004497 [exp] 309 / 5e-99 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10007168 [exp] 309 / 2e-98 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10029904 [exp] 305 / 1e-97 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10041723 [exp] 301 / 2e-95 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10019927 [exp] 296 / 7e-94 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 295 / 1e-93 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10008396 [exp] 297 / 2e-93 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G208444.1 pacid=42779474 polypeptide=Potri.002G208444.1.p locus=Potri.002G208444 ID=Potri.002G208444.1.v4.1 annot-version=v4.1 ATGTCAAATATCACAGGTGATGAAGGGAGCTTCTCTTCAGGAAATACTGGAGAAGAAGTCCAACAGCTCCAAGGAAAGCAGCAGCAGCAGGCACAAAATC ACTTACATGGCTCAGACTCAGTTGCTGCAACTAACAGCAATGGGTCTACCTCCCAACAGCCGGTGAAGAAGAAAAGAAATCTTCCAGGAACTCCAGATCC CACTGCTGAAGTCGTGGCTTTATCACCAACGACACTTATGGCAACAAACCGTTTTGTGTGTGAGATATGCAACAAAGGGTTCCAAAGGGACCAAAACCTG CAATTGCATAGGAGAGGCCATAATCTGCCATGGAAGCTCAGGCAAAGAACTACCACTGAGGTGAGGAAAAAGGTCTACATATGCCCTGAGCCAACATGTG TTCACCACAACCCGGCTCGTGCATTAGGAGATCTAACTGGCATTAAGAAGCATTTTAGCCGAAAACATGGCGAGAAGAAATGGAAATGTGACAAGTGCTC GAAGAAATATGCAGTACAATCTGATTGGAAAGCTCATCAAAAGACTTGTGGTACGAGGGAATACAAATGTGATTGTGGAACCATCTTTTCAAGAAGAGAT AGCTTCATCACCCACAGAGCTTTCTGTGATGCATTAGCAGAAGAAAACAACAAAGTAAACCAAGGAGTAATGGCCAACATGGGGTCAAACTTGCAAAACC AAATGCCAGAGCTCATGTCTTCGATGCCCTTAAGCGCCAACACTAGCACATCTATTGGAATTCCAGACTTCAACTGCTTCGACCCTAAGAACCCTCTCAA ATCTCTCCCTCAAGAACTCGTTCCAATTCCATTCAAGTCCATGAACATGGCAGGAGGCATGTTTTCGAGCAGCTCGGGCACTCTCTTTGGAAGTCCAAGA AGCATTTCCTCAACTTCTAGCCTCCAACTCAGTTCCAATGGCTCATCCGGCTTGCATTATCTTCAAGATAACAAAAACGGATGCCAAATTTCGGCCACTG CTCACATGTCAGCAACAGCCTTGTTGCAAAAAGCAGCACAAATGGGTGCCACCGCTAGCAATAGTATTAATTCCCCCATGATGCAAAAGAGCTTTGCCAG CAGCATGGCAGGTCCTGACCAGCTTTCTTCTATAAGATCATCAACTTATGGTGGAATTCAGCAGCATAACACCTCCTATGATGACCTCCCGCCACAGGCT TCGGATCAAACTAGCATGGCTGGAATGATCAATGGCGTTGGAGGATTTAACAACCAGCCCTTGCAAAGAGGGCCACAAGAAATGTCACAGATTTTTGACA CAGCTGGTACAGGTAGCTCAGCAATGAACGATATGGCAATGTTTGCAAGTATGTTCATGAGTAACGACCAAAATCCAGGGTTCATAAAAAATATGGAACA GGAGGATAGTGGCAATTCTGGTTTGATGCACGGAAGGAATGCATTAATGGAGCGGAATCCAACAGGACCTTCAAGGTTTGCTGGTACGCCTATTGAAGGT GGTGACATGATGACTCGTGACTTCATGGGGATTGGAGGAGCAAGGCCAACAAATTTTCAGGATCAACAGCAGCAGCACCAACCGAGATTGGAAATGGAAG CAATGAGCCAGCATCAAAGAATGCAAATGATGAATCCCTATCATCAACAACAACAGCCCTCACTTAGGGAACCAGCTATCGAAAAACCTTCTTCTATATG GGATGTTTGA
AA sequence Show only first row Show all	>Potri.002G208444.1 pacid=42779474 polypeptide=Potri.002G208444.1.p locus=Potri.002G208444 ID=Potri.002G208444.1.v4.1 annot-version=v4.1 MSNITGDEGSFSSGNTGEEVQQLQGKQQQQAQNHLHGSDSVAATNSNGSTSQQPVKKKRNLPGTPDPTAEVVALSPTTLMATNRFVCEICNKGFQRDQNL QLHRRGHNLPWKLRQRTTTEVRKKVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRD SFITHRAFCDALAEENNKVNQGVMANMGSNLQNQMPELMSSMPLSANTSTSIGIPDFNCFDPKNPLKSLPQELVPIPFKSMNMAGGMFSSSSGTLFGSPR SISSTSSLQLSSNGSSGLHYLQDNKNGCQISATAHMSATALLQKAAQMGATASNSINSPMMQKSFASSMAGPDQLSSIRSSTYGGIQQHNTSYDDLPPQA SDQTSMAGMINGVGGFNNQPLQRGPQEMSQIFDTAGTGSSAMNDMAMFASMFMSNDQNPGFIKNMEQEDSGNSGLMHGRNALMERNPTGPSRFAGTPIEG GDMMTRDFMGIGGARPTNFQDQQQQHQPRLEMEAMSQHQRMQMMNPYHQQQQPSLREPAIEKPSSIWDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.002G208444 [exp]	0	1
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.002G113700 [exp]	1.00	0.9572
AT5G54000			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121800 [exp]	2.82	0.9506
AT5G02580			Plant protein 1589 of unknown ...		Potri.006G213500 [exp]	3.46	0.9237
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Potri.005G234500 [exp]	5.74	0.9241	Pt-COL6.1
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023800 [exp]	6.40	0.8944
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Potri.011G048500 [exp]	7.14	0.9426
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.007G002400 [exp]	7.34	0.9411
					Potri.001G425366 [exp]	7.48	0.9353
					Potri.001G427901 [exp]	8.94	0.9416
AT2G47260	WRKY	ATWRKY23, WRKY2...	WRKY DNA-binding protein 23 (....		Potri.014G118200 [exp]	9.74	0.9087

Compare expression of checked genes

Potri.002G208444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.