Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47830 495 / 1e-172 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G083600 [exp] 59 / 3e-09 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Potri.010G172600 [exp] 57 / 2e-08 AT1G16310 504 / 2e-178 Cation efflux family protein (.1) Potri.010G172900 [exp] 52 / 5e-07 AT1G16310 572 / 0.0 Cation efflux family protein (.1) Potri.010G211300 [exp] 49 / 6e-06 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.008G049600 [exp] 47 / 3e-05 AT2G39450 595 / 0.0 Cation efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040922 [exp] 534 / 0 AT2G47830 545 / 0.0 Cation efflux family protein (.1.2) Lus10000033 [exp] 146 / 5e-41 AT2G47830 186 / 3e-57 Cation efflux family protein (.1.2) Lus10009817 [exp] 145 / 2e-40 AT2G47830 190 / 2e-58 Cation efflux family protein (.1.2) Lus10001768 [exp] 49 / 1e-05 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Lus10009598 [exp] 48 / 1e-05 AT1G16310 518 / 0.0 Cation efflux family protein (.1) Lus10040318 [exp] 45 / 0.0001 AT2G39450 587 / 0.0 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [poplar] [flax] Cation_efflux Cation efflux family PF16916 [poplar] [flax] ZT_dimer Dimerisation domain of Zinc Transporter
Representative CDS sequence Show only first row Show all	>Potri.002G209023.1 pacid=42778242 polypeptide=Potri.002G209023.1.p locus=Potri.002G209023 ID=Potri.002G209023.1.v4.1 annot-version=v4.1 ATGGGATTCAAATTCTACAAAAGATTTAGTAATTCAATCTTGTTGTACAAATCATCCCATTTTATCTCTTCAGGACGCCACCCGAGTGCTACTAGCAGTG CCAGTGCCAGCTTCCTACTCCAACCACCCTTCAATTCTCACCACCAAGTTAATAATAACAATAGCTATAACAACCCTCCTCCTTTCATAATCCATAGAAG GTGGCATTTTGGCCATTCTCATGCCCATCACTCTGACCACCACCACCGACCCTCTCCTGGTGAGCAAAGCGAAAGCATATTCCGTTTGGGACTCGCTGCC GATATCGGCTTGGCGGCTGGAAAGGCTTTCACTGGCTATTTATCTGGTAGCACTGCCATCATCGCCGACGCTGCTCATTCTGTCTCTGACGTGGTGCTTA GTGGGATTGCGTTGTGGTCTTTCAAAGCTGGGATGGCTCCTAAAGATAAAGAACACCCTTATGGGCATGGCAAGTTTGAAACTCTTGGAGCCCTTGGGAT ATCTTGCATGCTTTTAGCAACTGCTGGTGGTATTGCGTGGCATGCATTAGATCTTTTACTTGGGTTGCTGACTGCAGTGCCTGAGGTAGCAAACCATCCA TTGACCCATGAACATGTGCATAATCATCTTCAAGGTGGGCATCATCATGGGGTTGACATGGATCATCCCATCCTTGCTTTGAGTATGACAATTGTATCAA TTTCTGTTAAAGAAGGGCTTTACTGGGTAACAAAACGAGCTGGGGAAAGGCAAGGAAGTGGACTAATGAAAGCAAATGCTTGGCATCATCGTGCAGATGC CATTTCATCTGTTGTTGCTCTTATTGGTGTTGGAGGGGCTATTCTTGGGGTAAAGTTTCTGGATCCTCTTGCTGGACTTGTTGTCTCGGGTATGATACTT AAAGCTGGACTTGAATCAGGGTACCAGAGTGTTTTGGAACTGGTAGATGCTGCAATCCCAGAGGAAGATCTGTATCCTATAAAGCAAACAATACTACAAG TTCAGGGAGTCCAGGGATGCCATCGCTTGAGAGGAAGGAGGGCTGGTTCATCTCTATACCTTGATGTACATATTGTGGTTGATCCTTTTCTTAGTGTTAG TGCTGCTCATGAAATCGGTGAAAATGTTCGCCAGGAAATTCACAACTCCCATCCAGGAATAGCTGAAGTTTTTATACACATAGATCCCGCATATTTATGT ATTTCTCCTACTATGATGGATCAAGAAGAAAATTTAAATGGAAAAGTGAATCAGAATAAAAAGATTTCTTTGGATGACAAAGACATTGAACTGATTGTTT CTGACGTTTTCTCATCAAAGATCCCGGAGAAAATAGAGGTTGAGCGTATAACACGCCACCTGATGCAAGGCAATATATTACTCCAAATTGAAATTTCCAT GCGCCCTAGCATCTTGATCAGGGACGCCATGGAACTGGCAGGAGAAGCAGAAAAGGAAATCTTAAAGGCATCCTCTAGTATCATTCAAGTTGGTTTTCTG CTAAGATTAGGGAGTCCCATCCCCAAGTTTGTCAATGAGTAG
AA sequence Show only first row Show all	>Potri.002G209023.1 pacid=42778242 polypeptide=Potri.002G209023.1.p locus=Potri.002G209023 ID=Potri.002G209023.1.v4.1 annot-version=v4.1 MGFKFYKRFSNSILLYKSSHFISSGRHPSATSSASASFLLQPPFNSHHQVNNNNSYNNPPPFIIHRRWHFGHSHAHHSDHHHRPSPGEQSESIFRLGLAA DIGLAAGKAFTGYLSGSTAIIADAAHSVSDVVLSGIALWSFKAGMAPKDKEHPYGHGKFETLGALGISCMLLATAGGIAWHALDLLLGLLTAVPEVANHP LTHEHVHNHLQGGHHHGVDMDHPILALSMTIVSISVKEGLYWVTKRAGERQGSGLMKANAWHHRADAISSVVALIGVGGAILGVKFLDPLAGLVVSGMIL KAGLESGYQSVLELVDAAIPEEDLYPIKQTILQVQGVQGCHRLRGRRAGSSLYLDVHIVVDPFLSVSAAHEIGENVRQEIHNSHPGIAEVFIHIDPAYLC ISPTMMDQEENLNGKVNQNKKISLDDKDIELIVSDVFSSKIPEKIEVERITRHLMQGNILLQIEISMRPSILIRDAMELAGEAEKEILKASSSIIQVGFL LRLGSPIPKFVNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47830			Cation efflux family protein (...		Potri.002G209023 [exp]	0	1
AT5G38640			NagB/RpiA/CoA transferase-like...		Potri.017G111800 [exp]	5.65	0.7597
AT5G07740			actin binding (.1)		Potri.012G067900 [exp]	8.06	0.7532
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.003G148501 [exp]	9.16	0.7758
AT5G45760			Transducin/WD40 repeat-like su...		Potri.011G069700 [exp]	11.61	0.6840
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	14.89	0.7492
AT2G42240			RNA-binding (RRM/RBD/RNP motif...		Potri.007G046600 [exp]	17.94	0.6831
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	18.08	0.7638	Pt-ABA3.1
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	18.97	0.7451
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.014G192800 [exp]	24.45	0.7399
AT3G04160			unknown protein		Potri.019G029400 [exp]	28.24	0.7479

Compare expression of checked genes

Potri.002G209023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.