Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02560 363 / 7e-109 HD LD luminidependens, Homeodomain-like superfamily protein (.1.2) AT1G19860 56 / 1e-07 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G66270 47 / 6e-05 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132800 [exp] 1591 / 0 AT4G02560 349 / 8e-104 luminidependens, Homeodomain-like superfamily protein (.1.2) Potri.005G116001 [exp] 61 / 1e-09 AT1G19860 122 / 3e-32 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G236300 [exp] 57 / 5e-08 AT1G19860 318 / 2e-105 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.002G025100 [exp] 53 / 1e-06 AT1G19860 319 / 8e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G013600 [exp] 49 / 2e-05 AT1G19860 109 / 1e-25 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009816 [exp] 633 / 0 AT4G02560 559 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2) Lus10040921 [exp] 621 / 0 AT4G02560 677 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2) Lus10024316 [exp] 51 / 5e-06 AT1G19860 261 / 1e-83 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10012404 [exp] 49 / 2e-05 AT1G19860 256 / 1e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G209216.1 pacid=42779427 polypeptide=Potri.002G209216.1.p locus=Potri.002G209216 ID=Potri.002G209216.1.v4.1 annot-version=v4.1 ATGGAGGATTTGACAGAAACAGAGATTGGGAGCTCTGTGGAGTCGTTTCAAAAGTTTTTAGATTCGCAGAGAGAGCTTTTTCACAACCAAATCGATCATC TTCAAAGAATTGTTGTTACTCAATGCAAACTCACCGGCGTCAATCCTCTTTCTCAAGAAATGGCTGCTGGCGCTCTGTCGATAAAAATTGGAAAAAGACC CAGAGATTTGATAAACCCTAAGGCTGTCAAGTATATGCAAGAAGTTTTCTCTATCAAAGATGCAATTAGTAAGAAGGAATCACGTGAGATTAGTGCTCAA TTCGGTGCTACAGTTACACAGGTTCGAGATTTTTTTGCAAGCCAGCGTATGAGAGTGAGGAAACTGGTTCGGTTGTCAAGGGAGAAGGCTATTAGAGTTA ATGCACACAAAGGACCTCAAGATGGGGTCCCAACAACATCTGATGCTTTGATGCCTGTTGATTTGGTTCCCTTGAACTCTGTTGCCCCAAATCCAGTTCC CATGAATACTGTTAGCCCCAATCCAGCTCCCTTAAACGCTGTTATCCCCAATCCATTTTACTTGAACTCTGTTGCCCCCAATCCTGTTCCCTTCAGTTTT GTTAGCTCCAGCTCAGCTCCCTTAAACTTTGCTAGCCCCACTTCATCACTCTTAAACTCTTCTAGCCCAAATCCCGTTCCCTTAATTTCTGCAAGCCTGA ACCCAGTTCCCTTAAACCCTGCAAGCCTGAACCCAGTTCCCTTAGACTCTGTTGCCCAGGATCCTGTTCCCTTAAACGCTGTTGGTCCTTCCAGAGTTGA TGAAGTACCCTCTTGCTCAACACAGGATGATGTGTTGCCTGGTTTAGATGAATTAGATAAACATTTTGCTGAGAAGATTTTTGATTTGTTGCGGAAAGAA GAAACATTTTCTGGGCAGGTGAAGCTCATGGAATGGATCTTGCAAATACAGACTCCAGCTGTTCTAAATTGGTTTCTTGTTAAAGGTGGTGTCATGATTT TGACAACATGGTTAAGTCAAGCAGCTGCTGAAGAACAAACAAGTGTTCTTCTTGTCACCTTGAAGGTATTCTGTCATTTACCCCTACATAAAGCTCCTCC TGAACACATGTCAGCTGTACTTCACAGTGTCAATGGACTGCGGTTTTACAGGACTCCAGACATATCAAACAGGGCCAGGGTTTTGTTATCAAAATGGAGC AAAATGTTTGCAAAAAGTCAAGCAATCAAAAAACCCAACGGCATAAAGTCGTCTACAGATGCACAGGACATGATTTTGAAGCAGAGCATTGATGAAATTA TGGGCAATGAATCATGGCAGTCTGATATTGGTAATCCTGATGGTGTTCTTGCTCTCTCATCTGAAAGTTCTGAAAATATCAGGAAAATTGAGTCTTCGCA AGCATTGAAGCTGTTGCCTGCATCAACAGATGATTTGAGCAGGAAGCACATTCTAGGCGCATCTTCATCCCATACAAGAGAACGTAGAAAAGTTCAGCTT GTTGAACAGCCAGGCCAGAAAACAGCTGGCAGGAGCCCTCAGGCGACCAAAGCTGCCCCTGTTAATCAAGGTCGCCCGATGTCTGCGGATGATATCCAAA AAGCAAAAATGCGTGCTTTATTCATGCAGAACAAGCATGGGAAAACAGGTTCCTCATCCAATGGAAGCACTGGTATGAAAAATGGAGGGCTTAATAAGCC TTCAAGTATGATCCCCAGTTTGTGTCCAGTTTCTAAAATTCATATCCGGCCAAAGATTGAGGAATACAAGAAACCTGTGACACCTCCCCCCCAAGTTTCT AGTAAGGTTGAGGGTTTCCTTGATCTAAAGAAAGAAATCAATTCAAAGGAACCCATGGGGGGAGTTTGCATTAAAGTCCAGATCCCATGGCAGACTCCTC CAGAAATAAAACTCAGCGTTCTCTGGAGAGTGGGAACTGGTGAAAATAGCAAAGAAGTTGATGTTCAGAAAAACAGAAACCGTAGGGAGATAGAAACCAT CTATCAGACAGTCCAGCAGATACCATCTAATCCAAAGGAACCATGGGACCTTGAGATGGATTATGACGACACATTGACCCCAGAGATTCCAATTGAACAG CCACCTGATGCTGATGTTGCAGAAACACAGGTTTCCCATACTGAACATGTAAATACAGTAGTTGCATCTGCACCTTCCCTGCCTCAGGTTGGTGGAGGGA GTGCAACTGAACCAGATCTTGAGTTGCTTGCTGTACTGTTAAAAAATCCAGAATTGGTTTTTGCATTGACTTCTGGCCAAGCTGGCAATTTATCAAGTGA AGAAACTGTGAAGCTGCTTGATATGATTAAGACAGGAGGGGCTGGTCTGGCAGGTAGTTTAAATGGGCTTGGTGGGAAAGTGGAGGAGAAGGTTGAAGTC TCACTTCCATCGCCAACTCCTTCGAGCAACAATCCTGGAACGAGTGGATGGAGATCAGAATTTGCCAAGAATCCATTTTCCCAGCAGGCTTCAATGGGGA ACAGAGTTGTATACAGTGATCCTGGAGTCCCCACCAGTGTCCCCTTAGCAGAAAAGCATACTAGCTTGGTGCAGCATCAAAATCAGGCCACTAGCATCAG AATACCGCAGCAGCAAGCTAGCATTCCATTACTATCCCAGCATGTTTCGGCAGTGATGAACCCTTTCTCAATGCCTCAAACAAGTTCCATAGTACCTGAA AACCGACAACCTTCAATAGTTCTCCCAGCAAACCAGAGTTACCCCTCAAATTCTTCAATGTTACAGACACCATCCTCAGAAATGGTTTCAACCATGAAAA TTCTACCTGTTAACACCCCTTCCTTGCTAAACCTTTCAGCTGCTATGAACAACATAAAATCAACTCCATCTGTTTCTTTCACATCAAATCCACAGGAGAG ACGGCTAGTGCCTTTTCCACCATCAACAACCGCCGTACCAACACCAACACAGTTACAGTCACAACCTCCCCAGATAAACGAACCTCCGATTGTATACTTT ACACGGCCACATACTGGTGATGTAGGTCCAGTGGCTGATTCCTGGAGAGTTAGGCAGGGTTTAGTCTCAAACTCCCCTTCCCAAGTTAATCAAACAAACT ATGTGTCATCATTTGGAGGGCCTGTGCAGCCATCGTTGAGGTCAGGTCCTCCCCGGGAAAGAAATGAATATGTGAGTGATGTGGGTGATGAGGGTTATGA GTCTTGGAGTCCGGAGAATAGGCGTTATGAATCACAAGAGTACATGCCAGGGAGAAACCATTCAGGACCCAGATCCAGAATGAATTCCGGATGGGATTAT ATGCCTAATAATAATAATAATAATAATAATAGGTCCAGGCAACGGAATTCCTCTGGGCATGGGGACCGTAACTGGAATGGAAACAGAAGATGGCACTGA
AA sequence Show only first row Show all	>Potri.002G209216.1 pacid=42779427 polypeptide=Potri.002G209216.1.p locus=Potri.002G209216 ID=Potri.002G209216.1.v4.1 annot-version=v4.1 MEDLTETEIGSSVESFQKFLDSQRELFHNQIDHLQRIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLINPKAVKYMQEVFSIKDAISKKESREISAQ FGATVTQVRDFFASQRMRVRKLVRLSREKAIRVNAHKGPQDGVPTTSDALMPVDLVPLNSVAPNPVPMNTVSPNPAPLNAVIPNPFYLNSVAPNPVPFSF VSSSSAPLNFASPTSSLLNSSSPNPVPLISASLNPVPLNPASLNPVPLDSVAQDPVPLNAVGPSRVDEVPSCSTQDDVLPGLDELDKHFAEKIFDLLRKE ETFSGQVKLMEWILQIQTPAVLNWFLVKGGVMILTTWLSQAAAEEQTSVLLVTLKVFCHLPLHKAPPEHMSAVLHSVNGLRFYRTPDISNRARVLLSKWS KMFAKSQAIKKPNGIKSSTDAQDMILKQSIDEIMGNESWQSDIGNPDGVLALSSESSENIRKIESSQALKLLPASTDDLSRKHILGASSSHTRERRKVQL VEQPGQKTAGRSPQATKAAPVNQGRPMSADDIQKAKMRALFMQNKHGKTGSSSNGSTGMKNGGLNKPSSMIPSLCPVSKIHIRPKIEEYKKPVTPPPQVS SKVEGFLDLKKEINSKEPMGGVCIKVQIPWQTPPEIKLSVLWRVGTGENSKEVDVQKNRNRREIETIYQTVQQIPSNPKEPWDLEMDYDDTLTPEIPIEQ PPDADVAETQVSHTEHVNTVVASAPSLPQVGGGSATEPDLELLAVLLKNPELVFALTSGQAGNLSSEETVKLLDMIKTGGAGLAGSLNGLGGKVEEKVEV SLPSPTPSSNNPGTSGWRSEFAKNPFSQQASMGNRVVYSDPGVPTSVPLAEKHTSLVQHQNQATSIRIPQQQASIPLLSQHVSAVMNPFSMPQTSSIVPE NRQPSIVLPANQSYPSNSSMLQTPSSEMVSTMKILPVNTPSLLNLSAAMNNIKSTPSVSFTSNPQERRLVPFPPSTTAVPTPTQLQSQPPQINEPPIVYF TRPHTGDVGPVADSWRVRQGLVSNSPSQVNQTNYVSSFGGPVQPSLRSGPPRERNEYVSDVGDEGYESWSPENRRYESQEYMPGRNHSGPRSRMNSGWDY MPNNNNNNNNRSRQRNSSGHGDRNWNGNRRWH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.002G209216 [exp]	0	1
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.014G132800 [exp]	1.00	0.9657	Pt-LD.2
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	1.41	0.9513
AT3G08020			PHD finger family protein (.1)		Potri.009G059700 [exp]	2.44	0.9167
					Potri.009G040500 [exp]	4.00	0.9123
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	4.24	0.9198	Pt-RPB1.1
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.007G086700 [exp]	4.79	0.8966
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.001G190000 [exp]	5.29	0.9061	PAFA901
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	7.34	0.9116
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	7.41	0.9087
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	8.77	0.9130

Compare expression of checked genes

Potri.002G209216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.