Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62900 286 / 4e-78 CW-type Zinc Finger (.1) AT1G02990 258 / 9e-70 unknown protein AT4G15730 179 / 2e-45 CW-type Zinc Finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132900 [exp] 2226 / 0 AT3G62900 322 / 2e-89 CW-type Zinc Finger (.1) Potri.013G020200 [exp] 226 / 1e-59 AT3G62900 174 / 1e-43 CW-type Zinc Finger (.1) Potri.005G028700 [exp] 204 / 1e-52 AT3G62900 176 / 5e-44 CW-type Zinc Finger (.1) Potri.011G144500 [exp] 46 / 0.0003 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040919 [exp] 990 / 0 AT3G62900 307 / 6e-85 CW-type Zinc Finger (.1) Lus10009815 [exp] 503 / 7e-152 AT3G62900 301 / 4e-83 CW-type Zinc Finger (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [poplar] [flax] zf-CW CW-type Zinc Finger
Representative CDS sequence Show only first row Show all	>Potri.002G209409.1 pacid=42777358 polypeptide=Potri.002G209409.1.p locus=Potri.002G209409 ID=Potri.002G209409.1.v4.1 annot-version=v4.1 ATGATTTCTTTGGGGAGGAGAGATGCGAGAGAGGATTTAGGGTTAGGGTTTGGTAGTGAGAGAGAGATGGAAGATACTGAGCTTGAAGAAGGGGAAGCGT GCTCTTACCATAACATTAACACCAACAATGATGATGATTATGATGAGAGCATTGACCCTGATACTGCTCTCTCTTACATAGATGAGAAACTACAAGATGT CTTGGGACACTTTCAAAAAGATTTTGAAGGTGGAGTTTCAGCTGAGAATTTGGGGGCCAAGTTTGGTGGTTATGGTTCATTTTTACCTACATATCAGCGG TCTCCTGTTTGGTCTCACCCAAGAACCTCACCAAAAATTCAACATTTCAATGCATCTAGATCTCCAAACCATTTGCAACTGGAGGGTGGCCGCCATAGCT CTGTATCTTCGTCAACTGCATCTCAATCAGTAAGAATCGAACCTTCCTCCACAGTATTGAAAACGTCATCCTCCTTGAACGAGTCTGTTAAACAAGAAGC AAATGTGCCATCCACTCAATTTGCTGAGGAAGTTGTTCCTAGAGATGAATCTGTAAACAGGAAATGTGCTAGTTTACCAGATCAGAAAATGCTGAAAGTT CGAATCAAAGTGGGTTCCGATAACTTGTCGACACAAAAAAATGCTGCCATCTACAGTGGTCTTGGGCTTGATGTCTCACCATCTTCCTCACTGGATGACA GCCCCTCTGAGAGCGATGAGATGTCTCATGAACCTCAAGATGCTCGTCTTGAATCTCCTGCTCATATTCTTCAGATAATGACATCGTTTCCTGTGCCCGG AGGTCTGCTGCTATCACCTCTTCCTGATGATTTAATCCACTTGAAAGAGAAGGAAAAATTACTTAAAGACAGTGAATGCTTGCCTGTTCCAAGGTTCGGA CCAGAAAATTCTTGCATTGTAGTGAATGGGTCTAGCTCTGTGAAGGGTGATGGGACAATGTTTGGAGAGAAGAAGATAAAGTCAATAGCAGGAAATGAAC CTTCAGCAGAATCCAAGAGCAATGTTAATAAGGATTCTGGGAATGGTGGTGTTATATCGAAGGAGACAGAACTTGACACTTTTGCTTGTGAGGAGCTTGT TTCGAACACCTTAAAGCTTCCACTTTTGTCAAATTCATATTCTGCTGTTGTTGGCACTTCAAAAGGAATGAGGAGGGCATCTAACGTGTCCAAGGGAGTG ATGAGTGACAAAGTTTTTTCTGGTCTTACTAAAGAGGACTCACCGGTGCCAATATTGATCCAGGAGAATGGCTGGATCAATAATTCCAAATCCAAGTCCT TGGGAAAGGTTTGGGAAGATAAAAAAACTAGCACTCTTTGCAGTGAGTCAGTCTCCCCAAAGAAAGATGGTGATCGCAAAGAAGAAAAGCCTTATGAGTC AGTCAAAATTGACTCAAATGTTTCCAAGGGGAGAAAGGCTCCAAGTCAGGCTCCAACAGAACCTCCCAAACAGAATGCTGATGAGAAGGCTATGCCTTAT GAACAGGAAGGTATGAAGTTACCTCATGTTAAGGAGTCCTGTTCTGAGGGAAAAAAGAAACTAAAGGGAAGTCAAAGTCATGGCAATGTAGTTGCTGAGG CACCAAAGGAGAGTCTGAGGGTTGGCTCGTCTTTGTCACTGAAAAATAAGAAGATCAGTTGTGCAGACAAACATACAACTAAAGGGGAGTCAGAGGATTT GAAATTAAAAAAGAATTCTGGAAAAGTTGGCGATAGATACAGAGAGTTTTTTGGGGACATAGAACTAGAACAAGAAGAAATCCAGACGAGTCCATTGGTG AAGAATTATGATGATAAGCTGGGGGACTTAGAAATGGTTGAAAAGAGCACACATGGAAGTAACAGCATGTTTAAGGAAAGATCAAGCAGTAAGAAAGTGG ACAAGCTGTTAACATCTGAAGCATTTCCTAAAGCTGCATCAATTGGAGTTGTGCACAATGGAGACGGGCCCATACCTGATACTGCTCTTGGTGAAGATAA TTGGGTCTGTTGTGACAAGTGTCAAAAATGGCGGCTTCTTCCACCTCGTACAAACCCTGATGACCTGCCTGAAAAGTGGCTGTGTAGCATGCTTGACTGG CTGCCTGGTATGAACCGGTGTAGTTTTAGTGAGGATGAAACAACACTTGCAACTCGGTCTCTTAAACAAAACAATTCTGGTGGGAATATATCTGGAGTAA CCATGGCTGATGTTTGGAATGCTGATCAGAGCCACCAAAATCTTGATTCACATGTTGGGCTTAGAAAAAAGCATGGTTTAAAGGAGTTACCAAATATAAT GTATAAAGAAGGTGGACCTATTCGGTTGTCAAACCCTGCAAAGAAGAGCTTACAGGTATCGGCGACAAATGGAAGCTTAAATGATGTGAAACCATCTCCT TTGGTAACTGAACCCCTTTCCTTGAAACTGAGCAAGTCTAGCCATTTAGCTGTGGAGAAACTTGAACATAAGCCGAGAGAGAAGCATAGAGGACTGGACA TTTGTTCTGACCGAGGTGGTGGTTCTAAGCGATCAAAGGGGAAAGGCAAAAGAGATCTTGATCAAGATTCTTTTAAAGCTGCTAAGAAAATTAGAACTGA AGATTTGCCAGAAGATTGGACATCTGATCATGGCGGGGCAATTGAAAAGGTGGGTCCTACTTCAAGCAATGCTTTGATTACTACGTCATCAGCGAAGAAT CTTCCCAAACACAACGATTGTGCTTTTAAGAACATAAAGCATGATCAAAAGGACTGGGCTCAACTTTCTTCTAGAAAAACAAAGGATGGTGTCTGCACTT CCTTGGATAATGGGTCTGTGGATGTGGTCCACTGTGATGACAAAGATACAAAAAAAAGGAGAGTGAAGGAAAGTTATGATGCCCAACTCTATCATGTTTC CCTTTCAAACACTGGGCATCATCTCCAGGATAGTAATATCTTGGCCAAGGAGGAGTTGAGTGGGAATGACTACAGGAAAGGTAAGAAGGCCAGAGTATCC AGGTCCGAAGGGAAGGAGGCCAGTGGAAGTAAAAGCAATGGTAGGACAGACAAAAAAGGTTGCCACAGAAAGAATCAGCAACAAGGACATGACCTAGGGA GCACCCTATCCCAGCAGAGCTTGGATGGTGTGGATTCTTTGAAGAGGGACTCAGGACTGTTACATCTGGCAGCTACTTCTAGCTCTTCCAAAGTTTCTAG CTCCCACAAAACCAAAGCCAATTTCCATGATGCAAAAGGTTCACCGGTAGAATCAGTTTCATCATCACCTATGAGAGTTTCAAAACCAGAAAAACTTGCA TCAGCAAGAAAGAATGTCACCAAGCAAGATGATTCTGCTGATGCTGGTTTCTTTGCCCTAGGTGGCCCAAGAAGATTTTCTGACAGGGAAGATGATGGTG GGAGTGATCCATCCCTTGATGATAAAACACAAATAGAAAAACACCATCTTGTTGATGGGTCTCATCCAAGGAAGTCTGGAAATGGTTCCTCTTCGTGGTC CAAGGACAAGAATAGGAATTTTAATTCTGAGTTTGAAAATGAAGTTAAAGTTTCCAATTCCTTTAATGCACAAGCACCTGCCTGTGAAGTAAAACCAACA AATTGCAAAAACAAGGCTGAAGTGAAGCTTGAGATCAAATCTGAGGAAAATCAGAATAAACATGTTGATAAGGACTCTGCAGGACACTTGTTGAGTGATA ATAGTAAAAGAGAGAATCAGTTAAATGTTGGAGGACCCAGTTGTGCGGATGTTAAAGTTGATGCTACCAGAAACCATGATACAGTCTCTACTGCAAAGCA GAGTGTGGAGGAGCCTTCTTCTGGAAGAGCTCAAAATGAGACACTTGCTGACTGCCCTTATCCAAATCATGGATCCCACGAAGGAAACAGGGCAAATATG TTGGCTGTAAATGCCCCTGCTGGAGATAATGAATTGAAAGGGTTGAAACAGAATCGAGAGGTTGATCATCCAAATGGGATGCATCACCATCACAGCAGTT CCAGAAATGCCTCATCAAATGGGCACAGGGTCAGGGATCATGATGCTCCAGGTGCAGTTAAAAGGGATTCCTTCAGTCAGGCTGCAAACAATGCTTTGAA AGAAGCTAAAAATCTGAAACACATGGCTGATCGTCTGAAGAACTCTGGGTCCAATCTTGAGAGTACAAGGCTGTACTTTGAGGCAGCTCTGAAGTTTCTT CATGGAGCGTCTCTGTTGGAAACCTGTGGTGGTGAGAATGCCAAAAATGGAGAGCCAATGCAAGTTTACAGTAGCACTGCAAAACTGTGCGAGTTTTGCG CCCACGAATACGAGAAGTCCAAAGACATGGCTGCTGCTGCTCTGGCCTACAAATGCATGGAGGTTGCATACATGAGGGCGATTTATTCCTCGCATACTAG TGCAAATAGAGATCGGCACGAGTTGCAGATGGCTTTACAAATTATTCCTCCAGGTGAATCACCGTCTTCCTCTGCCTCTGATATTGATAACCTGAACAAC ACAACAACACCAGACAAAGTTCCATTGACTAAAGGTATTGGCTCTCCTCAAGTGACTGGGAGTCACATTATTGCTGCTCGGAATCGTCCCAACTTTGTGC GGTTGCTCAGATTTGCACAGGATGTAAATTCTGCAATGGAAGCCTCTAGAAAATCACGACTTGCTTTTGCAGCAGCTAATGCCAGCTTTAGAGAAGCCCC GTGTGGAGAGGGCATTTCTTCCATTAAAACAGCTCTTGATTTTAACTTCCAAGATGTCGAGGGACTACTACGAATGGTGCGGCTTGCAATTGAAGCTATA AGCCGCTAA
AA sequence Show only first row Show all	>Potri.002G209409.1 pacid=42777358 polypeptide=Potri.002G209409.1.p locus=Potri.002G209409 ID=Potri.002G209409.1.v4.1 annot-version=v4.1 MISLGRRDAREDLGLGFGSEREMEDTELEEGEACSYHNINTNNDDDYDESIDPDTALSYIDEKLQDVLGHFQKDFEGGVSAENLGAKFGGYGSFLPTYQR SPVWSHPRTSPKIQHFNASRSPNHLQLEGGRHSSVSSSTASQSVRIEPSSTVLKTSSSLNESVKQEANVPSTQFAEEVVPRDESVNRKCASLPDQKMLKV RIKVGSDNLSTQKNAAIYSGLGLDVSPSSSLDDSPSESDEMSHEPQDARLESPAHILQIMTSFPVPGGLLLSPLPDDLIHLKEKEKLLKDSECLPVPRFG PENSCIVVNGSSSVKGDGTMFGEKKIKSIAGNEPSAESKSNVNKDSGNGGVISKETELDTFACEELVSNTLKLPLLSNSYSAVVGTSKGMRRASNVSKGV MSDKVFSGLTKEDSPVPILIQENGWINNSKSKSLGKVWEDKKTSTLCSESVSPKKDGDRKEEKPYESVKIDSNVSKGRKAPSQAPTEPPKQNADEKAMPY EQEGMKLPHVKESCSEGKKKLKGSQSHGNVVAEAPKESLRVGSSLSLKNKKISCADKHTTKGESEDLKLKKNSGKVGDRYREFFGDIELEQEEIQTSPLV KNYDDKLGDLEMVEKSTHGSNSMFKERSSSKKVDKLLTSEAFPKAASIGVVHNGDGPIPDTALGEDNWVCCDKCQKWRLLPPRTNPDDLPEKWLCSMLDW LPGMNRCSFSEDETTLATRSLKQNNSGGNISGVTMADVWNADQSHQNLDSHVGLRKKHGLKELPNIMYKEGGPIRLSNPAKKSLQVSATNGSLNDVKPSP LVTEPLSLKLSKSSHLAVEKLEHKPREKHRGLDICSDRGGGSKRSKGKGKRDLDQDSFKAAKKIRTEDLPEDWTSDHGGAIEKVGPTSSNALITTSSAKN LPKHNDCAFKNIKHDQKDWAQLSSRKTKDGVCTSLDNGSVDVVHCDDKDTKKRRVKESYDAQLYHVSLSNTGHHLQDSNILAKEELSGNDYRKGKKARVS RSEGKEASGSKSNGRTDKKGCHRKNQQQGHDLGSTLSQQSLDGVDSLKRDSGLLHLAATSSSSKVSSSHKTKANFHDAKGSPVESVSSSPMRVSKPEKLA SARKNVTKQDDSADAGFFALGGPRRFSDREDDGGSDPSLDDKTQIEKHHLVDGSHPRKSGNGSSSWSKDKNRNFNSEFENEVKVSNSFNAQAPACEVKPT NCKNKAEVKLEIKSEENQNKHVDKDSAGHLLSDNSKRENQLNVGGPSCADVKVDATRNHDTVSTAKQSVEEPSSGRAQNETLADCPYPNHGSHEGNRANM LAVNAPAGDNELKGLKQNREVDHPNGMHHHHSSSRNASSNGHRVRDHDAPGAVKRDSFSQAANNALKEAKNLKHMADRLKNSGSNLESTRLYFEAALKFL HGASLLETCGGENAKNGEPMQVYSSTAKLCEFCAHEYEKSKDMAAAALAYKCMEVAYMRAIYSSHTSANRDRHELQMALQIIPPGESPSSSASDIDNLNN TTTPDKVPLTKGIGSPQVTGSHIIAARNRPNFVRLLRFAQDVNSAMEASRKSRLAFAAANASFREAPCGEGISSIKTALDFNFQDVEGLLRMVRLAIEAI SR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62900			CW-type Zinc Finger (.1)		Potri.002G209409 [exp]	0	1
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G077700 [exp]	1.41	0.8905
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	2.00	0.8842
AT5G07980			dentin sialophosphoprotein-rel...		Potri.012G066600 [exp]	2.23	0.8834
AT1G58230			binding (.1)		Potri.002G111000 [exp]	3.00	0.8852
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	3.60	0.8964	Pt-CRP.3
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	4.24	0.8806
AT5G24350			unknown protein		Potri.012G020000 [exp]	4.69	0.8586
AT1G58250		SAB	SABRE, Golgi-body localisation...		Potri.002G110700 [exp]	5.29	0.8553	SAB.2
					Potri.013G071800 [exp]	6.32	0.8747
AT3G50370			unknown protein		Potri.007G043300 [exp]	6.48	0.8751

Compare expression of checked genes

Potri.002G209409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.