Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65470 325 / 3e-100 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G077800 [exp] 664 / 0 AT1G65470 346 / 2e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003491 [exp] 548 / 0 AT1G65470 635 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10004453 [exp] 543 / 0 AT1G65470 632 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10008729 [exp] 417 / 1e-135 AT1G65470 616 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10024521 [exp] 393 / 5e-126 AT1G65470 647 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12253 [poplar] [flax] CAF1A Chromatin assembly factor 1 subunit A
Representative CDS sequence Show only first row Show all	>Potri.002G209795.1 pacid=42779777 polypeptide=Potri.002G209795.1.p locus=Potri.002G209795 ID=Potri.002G209795.1.v4.1 annot-version=v4.1 ATGGTGGGTTTGTTAATGGAAGAGAGTGGCATGTCGTTTACCAAATTGGTGGAGGAAATTTATAAGAAGTTAGTGAAAATGAGTGGGGATTGGACTGTTG CAGTAGTGAAAAATGTTGTGTTGTTTGTTGGTCAAAGAGTAATGTACGGTGTGCCTAATGTTGATGCTGATATTTTGGAGGACGAGACTCATTCTTCTCT TTGGTGCTGGGAGACAAGAGATTTCAAGCTAATGCCGAAATATGTCCATGGAGCATTGAAAATTAGGTGCACGTGTCGAAAAAAGATTCATGACAGGATT GCTGTTGTTTCTGAAATGATAACTGCATTACAAAAGCAAGAGACTAATCAAAATTACGAGAGTGATTTAATAAAATTATCAGAGAAGCTTGGTAAAGTTT TAACAGAGGCAGACATTCGATTGTTAATTGATGGCTTGTTACAGAAAAATGGAGCAGAGATAGCTGATAAGGAAGCAAAACAAGAAGAGAAACTACTCGT CAAGCAATTGAAGAAAAATAAACGAGAAGAGGAAAAGGAGAAAAAAAGGATGGACCTTGAACTTCAAAAGGAAAAGAGACAAACTGAAAAAGAGCAAAAG CGATTGCAAGAGGAGGCAAAAAAGGATGAACGGCGTCGTGAAAGGGAAGAGTCTGAAATTAAAAGACAGTTGAAAAGGCAGCAAGAGGAAGTTGAGAAGG AACAGCGACATAAAGAGAAGGAAGAAGCTGAGTTGAAAAGGCGAGTGGCTATACAGAAGCAAGCTTCAATGATGGAACGCTTTCTAAAAAGAAGCAAAAG TAATTCCCCATGTCAGAATGACCAGACTTTAACTAAAGCAACCACTTTTGATTCATCAAGCAAAGAGAGTAAAAGGATTGCTGAGGCAATTACTCAACTG ATGGACTGTGCTCTTTCATTAAATGATAACATTACAGCTGATGACATTCGCAAGTCATACTTATCTTCCTGGTGTCATTTGGGTTTCTCTATTCGTGCCA ACAGAAAGCAGCATTGGAGTATCCGCAGGAAGCCTAAGACTGGACTGTTTAAGGAACTAAAGCTAACTGCTATTAGGGACCCAACTCATAATGATGATTC AAGTGCAGAGAAGCTTGATAGTGGATGGGGACATCAATCTTCTGATGACAGATCGTGCGATGATGTTAGGAAGTGTAACTGGAGGAAGCAATTGTTGCAA TTTGATAAGAGCCATAGACTTGCATTTTATGGCATCTGGCCTAAGAAAAGTCATGTTGTTGGACCATGCCATCCATTCAGGAGGGATCCAGACTTAGATT ATAACGTTGACAGTGATGAAGAATGGGAAGAGGAGGATCCTGGTGAAAGCCTCTCGAATTATGACAAGGATGATGGAGAAGAAATCTTAGAGGAAGAATA TTCAAAAGCTGATGAAGAAGAAGAGAGTGAAGATGGTTTTTTTGTACCTGATGGGTATCTCTTAGAAAATGAGGGAGTACAGCTTGACAGAATGGACACT GATCTGTCAGTGGAGGAGGCCAGAAGCTCACCTTGTTGCAAGCAAGACTTACAGAGTGAGGAGTTTTGTACATTGCTGAAACAGCAGAGATATTTGAACA ATTTCACCGATAATGCCCTTAGGAAAAATCATCCCTTGATTATGTTGAATCTAATGCATGAGAAGGATGCATTCTTAGTGGCTGATGATCTTGGTGACAT TCCTAAAGTTGAAAAAATGTGTTTGCAAGCACTTAGCATCCGAGCATTTCCTGGTGGACCGCAAATAGAGATATCCTTGGATGTGTCCCCTGAAAATCAT GATGCTTGCCTGTCAAATTCCAAGCCCAGTGCTACACTTATCCCAACTATGATAACTCTACAAGACTCAGATATGCCTTTAGTTGTGTTTGTTATTCAGT CTTGCTCGCAAAGTATGAATAAAGTGGTTGAATCACTGCATCAGAAATTCCCCCCTGTCTCAAAGTCGCAATTAAGAAACAAAGTTCGTGAGATGTCAAA TTTTATGGATATTCGTTGGCAGGTTTTTGGAGCTTAA
AA sequence Show only first row Show all	>Potri.002G209795.1 pacid=42779777 polypeptide=Potri.002G209795.1.p locus=Potri.002G209795 ID=Potri.002G209795.1.v4.1 annot-version=v4.1 MVGLLMEESGMSFTKLVEEIYKKLVKMSGDWTVAVVKNVVLFVGQRVMYGVPNVDADILEDETHSSLWCWETRDFKLMPKYVHGALKIRCTCRKKIHDRI AVVSEMITALQKQETNQNYESDLIKLSEKLGKVLTEADIRLLIDGLLQKNGAEIADKEAKQEEKLLVKQLKKNKREEEKEKKRMDLELQKEKRQTEKEQK RLQEEAKKDERRREREESEIKRQLKRQQEEVEKEQRHKEKEEAELKRRVAIQKQASMMERFLKRSKSNSPCQNDQTLTKATTFDSSSKESKRIAEAITQL MDCALSLNDNITADDIRKSYLSSWCHLGFSIRANRKQHWSIRRKPKTGLFKELKLTAIRDPTHNDDSSAEKLDSGWGHQSSDDRSCDDVRKCNWRKQLLQ FDKSHRLAFYGIWPKKSHVVGPCHPFRRDPDLDYNVDSDEEWEEEDPGESLSNYDKDDGEEILEEEYSKADEEEESEDGFFVPDGYLLENEGVQLDRMDT DLSVEEARSSPCCKQDLQSEEFCTLLKQQRYLNNFTDNALRKNHPLIMLNLMHEKDAFLVADDLGDIPKVEKMCLQALSIRAFPGGPQIEISLDVSPENH DACLSNSKPSATLIPTMITLQDSDMPLVVFVIQSCSQSMNKVVESLHQKFPPVSKSQLRNKVREMSNFMDIRWQVFGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.002G209795 [exp]	0	1
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	2.82	0.8913
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Potri.006G249900 [exp]	4.24	0.8403
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.016G058600 [exp]	6.16	0.8394
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G082901 [exp]	12.96	0.8363
AT5G05800			unknown protein		Potri.008G205550 [exp]	14.07	0.8674
AT1G79910			Regulator of Vps4 activity in ...		Potri.001G181300 [exp]	15.39	0.7475
AT2G32910			DCD (Development and Cell Deat...		Potri.005G042700 [exp]	15.90	0.8509
AT1G65920			Regulator of chromosome conden...		Potri.017G139600 [exp]	16.43	0.8068
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Potri.016G082500 [exp]	21.65	0.8028
AT3G06130			Heavy metal transport/detoxifi...		Potri.013G025300 [exp]	25.80	0.8005

Compare expression of checked genes

Potri.002G209795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.