Plant FIBer expression Database

Potri.002G209900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03200 1086 / 0 catalytics (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003165
[exp]
1108 / 0 AT4G03200 1110 / 0.0 catalytics (.1.2)
Lus10002341
[exp]
1107 / 0 AT4G03200 1118 / 0.0 catalytics (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF03190 Thioredox_DsbH Protein of unknown function, DUF255
Representative CDS sequence
>Potri.002G209900.4 pacid=42779701 polypeptide=Potri.002G209900.4.p locus=Potri.002G209900 ID=Potri.002G209900.4.v4.1 annot-version=v4.1
ATGAATCCCAAACGCCAAACAGTCTCGCCACCGGGACCGAACCAACACTTCTTCCTTGTTAATGCCAACAAGAAACTCTCTTCGTTTCCACCTTCTTCTT
CTATGCTTAAACTACTTCGACTCTCGTCTTCTCTTCTAGCCCGTCACTCTTTTAGTACAACAAGTAAATTATCTTCCTCGTTAAGAAGACCAACAAAGTA
CCGCAACTGTCCTTGTTCCTCGGCATTTGTTGGTCGTTTCCACACGCACAAGGTGTTGGCCATGGCTGAAACTACGTCTTCGTCTTCGTCTTCTCACGAG
CATACTAATCGTCTCTCAGCTGAGCACAGTCCATATCTCCTTCAACACGCCCATAACCCTGTCAATTGGTACCCATGGGGCGAAGAAGCATTCGCTGAAG
CACGTAGACGAGACGTCCCAATTTTCTTATCAATTGGATACAGCACTTGTCATTGGTGTCATGTTATGAAGGTGGAGTCTTTTGAGGATGAAGAGGTCGC
TGAATTGTTGAATGATTCGTTTGTCAGTGTGAAGGTGGATAGAGAGGAACGACCTGATGTTGACAAGGTCTATATGACATTTGTACAGGCATTGTATGGT
GGAGGAGGGTGGCCACTCAGTGTCTTCATTTCACCTGATCTGAAACCTTTGATGGGTGGAACTTACTTTCCCCCAGATGATAAGTATGGAAGACCAGGAT
TTAAGACCATACTTAGAAAGGTAAAGGATGCTTGGTTCAGTAAGAGGGATACGCTTGTGAAGAGTGGAGCCTTTGCTATTGAACAGCTGTCAGAAGCATT
GTCAGCAAGTGCAAGTTCAAAGAAATTGCCAGATGAGCTTTCACAAAATGCTTTGCATCTGTGTGCAGAACAACTTTCTCAAAGCTATGATTCACGATAT
GGAGGGTTTGGATCTGCCCCAAAGTTTCCTAGACCGGTTGAGATCCAATTGATGCTTTACCATTCAAAAAAATTGGATGATGCTGGAAATTACAGTGAAT
CAAAGAAAGGTCTGCAGATGGTTTTCTTTACCTTGCAATGCATGGCAAGGGGAGGCATTCATGATCATATTGGAGGTGGTTTCCACAGATATAGTGTGGA
TGAACGCTGGCATGTTCCTCATTTTGAGAAAATGCTGTATGATCAAGGCCAACTTGTTAATGTTTACTTGGATGCCTTTTCCATTACCAATGATGTCTTC
TATTCAAGTCTATCCCGTGATATTCTTGATTATTTGAGGAGAGACATGATTGGACCAGAAGGTGAAATATTTTCAGCAGAGGATGCTGATAGTGCTGAGC
GTGAAGATGCCAAAAAGAAAAAGGAAGGAGCCTTTTACATATGGACCAGTCAAGAGATTGATGACCTCCTTGGAGAGCATGCAACTCTTTTTAAGGACCA
CTATTATGTAAAGCCTCTGGGGAACTGTGACCTTTCTAGAATGAGTGATCCACAAGATGAATTTAAGGGGAAAAATGTGCTCATTGAATTAACTGATACT
TCAGCACCGGCAAAAAAATATGGCCTGCCTCTTGAAAAATATCTTGATATTCTGGGTGAGTGCAGGCAAAAGCTTTTTGATGCAAGATCCAGAGGACCAA
GGCCACATTTAGATGATAAGGTAATTGTCTCCTGGAATGGACTTGCAATTTCATCTCTTGCAAGAGCTTCCAAAATCCTTATGGGCGAAGCAGAGGGCAC
AAAATACAACTTCCCGGTTGTTGGTTGTGATCCCAAGGAATACATGACTGCTGCAGAGAAGGCAGCGTCTTTCATCAGAAGGCATCTTTATAATGAACAA
GCTCACAGGCTAGAGCACAGCTTTAGGAATGGTCCGTCTAAAGCACCTGGATTTTTAGATGATTATGCATTTCTAATTTCTGGGTTGCTGGATCTTTATG
AGGTGGGTGGCGGGATCCATTGGCTAGTGTGGGCAACCGAACTACAGAATAAACAGGATGAATTATTTCTCGACAGAGAGGGAGGAGGCTATTTTAATAC
CCCAGGAGAAGATCCTTCAGTTCTCCTACGAGTAAAGGAAGACCATGATGGTGCTGAGCCCTCAGGAAATTCAGTTTCGGCAATAAATCTCATAAGATTG
GCCTCTATGATGACTGGCAGCAAGTCTGAGTATTACAGGCAGAATGCTGAGCATCTTCTGGCAGTTTTTGAGTCGAGATTGAAGGACATGGCTATGGCAG
TACCTCTGATGTGCTGTGCAGCTGACATGATCTCTGTGCCTTCCCACAAGCAAGTTGTCTTAGTTGGCCACAAATCATCCTTGGAATTCGATAAAATGCT
TGCTGCTGCTCATGCATCATATGATCCCAATAGAACAGTGATTCATATAGATCCTACCGACAATGAAGAAATGGAGATTTGGGAGGACAATAATAGCAAT
ATAGCTCTCATGGCAAGGAATAATTTTGCTGCAGATAAAGTAGTTGCTCTCGTCTGTCAAAATTTCACATGCAGTCCCCCAGTCACGGATCCCAAGTCTC
TTAAAGCATTGCTTCTCAAGAAACCTACCTGA
AA sequence
>Potri.002G209900.4 pacid=42779701 polypeptide=Potri.002G209900.4.p locus=Potri.002G209900 ID=Potri.002G209900.4.v4.1 annot-version=v4.1
MNPKRQTVSPPGPNQHFFLVNANKKLSSFPPSSSMLKLLRLSSSLLARHSFSTTSKLSSSLRRPTKYRNCPCSSAFVGRFHTHKVLAMAETTSSSSSSHE
HTNRLSAEHSPYLLQHAHNPVNWYPWGEEAFAEARRRDVPIFLSIGYSTCHWCHVMKVESFEDEEVAELLNDSFVSVKVDREERPDVDKVYMTFVQALYG
GGGWPLSVFISPDLKPLMGGTYFPPDDKYGRPGFKTILRKVKDAWFSKRDTLVKSGAFAIEQLSEALSASASSKKLPDELSQNALHLCAEQLSQSYDSRY
GGFGSAPKFPRPVEIQLMLYHSKKLDDAGNYSESKKGLQMVFFTLQCMARGGIHDHIGGGFHRYSVDERWHVPHFEKMLYDQGQLVNVYLDAFSITNDVF
YSSLSRDILDYLRRDMIGPEGEIFSAEDADSAEREDAKKKKEGAFYIWTSQEIDDLLGEHATLFKDHYYVKPLGNCDLSRMSDPQDEFKGKNVLIELTDT
SAPAKKYGLPLEKYLDILGECRQKLFDARSRGPRPHLDDKVIVSWNGLAISSLARASKILMGEAEGTKYNFPVVGCDPKEYMTAAEKAASFIRRHLYNEQ
AHRLEHSFRNGPSKAPGFLDDYAFLISGLLDLYEVGGGIHWLVWATELQNKQDELFLDREGGGYFNTPGEDPSVLLRVKEDHDGAEPSGNSVSAINLIRL
ASMMTGSKSEYYRQNAEHLLAVFESRLKDMAMAVPLMCCAADMISVPSHKQVVLVGHKSSLEFDKMLAAAHASYDPNRTVIHIDPTDNEEMEIWEDNNSN
IALMARNNFAADKVVALVCQNFTCSPPVTDPKSLKALLLKKPT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G03200 catalytics (.1.2) Potri.002G209900
[exp]
0 1
AT4G01280 MYB Homeodomain-like superfamily p... Potri.002G163100
[exp]
2.23 0.8512
AT3G52950 CBS / octicosapeptide/Phox/Bem... Potri.005G070500
[exp]
4.89 0.8393
AT1G71800 CSTF64 cleavage stimulating factor 64... Potri.002G061200
[exp]
8.83 0.8498
AT1G58470 XF41, ATRBP1 RNA-binding protein 1 (.1) Potri.002G115000
[exp]
9.79 0.8500
AT5G44090 Calcium-binding EF-hand family... Potri.002G035800
[exp]
10.00 0.8396
AT5G64610 HAM1 histone acetyltransferase of t... Potri.002G089500
[exp]
12.24 0.8142
AT5G13240 transcription regulators (.1) Potri.010G115800
[exp]
14.69 0.8283
AT5G46410 SSP4 SCP1-like small phosphatase 4 ... Potri.011G078300
[exp]
14.96 0.8431
AT4G26680 Tetratricopeptide repeat (TPR)... Potri.014G166001
[exp]
18.60 0.7705
AT4G03220 Protein with RNI-like/FBD-like... Potri.015G002100
[exp]
19.97 0.8366

Potri.002G209900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.