Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74680 564 / 0 Exostosin family protein (.1) AT3G45400 520 / 0 exostosin family protein (.1) AT3G03650 484 / 2e-168 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT1G67410 317 / 8e-104 Exostosin family protein (.1) AT2G35100 231 / 1e-70 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 230 / 5e-70 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT1G34270 220 / 8e-66 Exostosin family protein (.1) AT5G16890 218 / 1e-64 Exostosin family protein (.1) AT5G25820 87 / 9e-18 Exostosin family protein (.1) AT4G16745 86 / 1e-17 Exostosin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067400 [exp] 533 / 0 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.019G044600 [exp] 523 / 0 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.008G034500 [exp] 305 / 4e-99 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.012G124600 [exp] 255 / 3e-79 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 249 / 3e-77 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.019G086800 [exp] 231 / 5e-70 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.013G116200 [exp] 226 / 5e-68 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 219 / 4e-65 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 137 / 5e-39 AT3G45400 145 / 5e-43 exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002060 [exp] 598 / 0 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 535 / 0 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 525 / 0 AT3G45400 622 / 0.0 exostosin family protein (.1) Lus10005684 [exp] 522 / 0 AT3G45400 619 / 0.0 exostosin family protein (.1) Lus10024214 [exp] 510 / 2e-179 AT1G74680 468 / 3e-163 Exostosin family protein (.1) Lus10013627 [exp] 434 / 4e-151 AT3G45400 524 / 0.0 exostosin family protein (.1) Lus10015791 [exp] 311 / 4e-101 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 309 / 2e-100 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10038355 [exp] 251 / 3e-78 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10036219 [exp] 254 / 5e-78 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.002G210000.1 pacid=42779350 polypeptide=Potri.002G210000.1.p locus=Potri.002G210000 ID=Potri.002G210000.1.v4.1 annot-version=v4.1 ATGTCTGAGAAAGCCAAGTTCTTCTCTAGATCTCTTTTCTTTCTAATTACCATCTCTATCTTCCTTTTGATCCTTTCTTCTTTTTCCCTTGTTCAATTTC CCGGTACTCATTTCATTCCCAGATCAGTTTTCAAGCTAATTCTTGTTAATAGCACATCATTTTTCTTGAAACCCAATGCCCAAACTGAACTTGTCAAATT TCCCTTCTTCTCTTCCACTGATACTAATTTGTCAATGAGATGTGGAAGTTTGTCTTGTCCAAACACCAATATGGGTGCTTCTAGATGCTACAGAAACAAA ACATGTGGTCGAAACCAGGCTCTCCGAAAGCTGAAGGTATTTGTGTATGATTTGCCTCCAGAGTTTCACTTTGGATTATTGGGTTGGAAGGGAAATACAA ATCAAACTTGGCCAAATGTTGACAGCCACAGTCGTATCCCACCATACCCAGGTGGGTTGAATTTACAGCATAGTGTGGAGTACTGGCTAACCCTTGATCT TCTGGCATCAAACACTCCAAAGGTGGGCACCGCAGTAAGAGTGCAAAATTCTAGTCAGGCAGATATTGTTTTTGTGCCGTTTTTCTCTTCTCTAAGCTAT AATCGGCATTCTAAACTACATGGAAAGGAGAAAGTCAGTGTTAACAAAATGCTGCAGACTAAATTAGTGCAATTTTTGACGGCTCGGGATGAGTGGAAGC GGTTTGGGGGGAACGATCATTTGATTGTAGCCCATCATCCGAATAGCATGTTACATGCCAGAAAAAAGCTGGGTTCAGCTATGTTCGTGCTTGCAGATTT TGGGAGATACCCTGTTGAAATTGCCAATCTTGGGAAAGATATAATTGCTCCTTACAAGCATGTTGTGAGGACCATTCCGAGTGGTGAATCAGCTCAGTTT GACCGCAGACCAATATTAATGCATTTCCAAGGAGCAATTTATAGAAAGGACGGAGGAGCTATTCGCCAAGAACTTTACTACCTTCTAAAAGATGAGAAAG ATGTGCACTTCACATTTGGAACATATCGAGGGAATGGAATCAAAAAAGCAGCCCAAGGGATGGCTTCATCCAAATTCTGTCTGAATATTGCTGGGGATAC CCCTTCCTCCAATCGCCTGTTTGATGCCATTGCAAGTCATTGTGTTCCTGTGATAATAAGTGATGACATTGAGCTACCATTTGAAGATGTCCTAGACTAC TCAGAATTTTGTCTATTTGTTCGAGCATCTGATGCTGTTAAGAAAGGGTATTTACTGGATCTTCTTCGTGGAATTGAGAAAGACCAGTGGACCAAGTTGT GGGAACGATTAAAGGAAATTGCTCCTCACTTTGAATATAGCTATCCATCCCAGCCCGGTGATGCTGTGGATATGGTTTGGAAGGCTGTGTTACGTAAAAC ATCCTCAGTGCAATTTAAACGTCACAGGAAGAACAGATATGCGAGGCCAGAGGCTTTCCTGAAGAGAATTTAA
AA sequence Show only first row Show all	>Potri.002G210000.1 pacid=42779350 polypeptide=Potri.002G210000.1.p locus=Potri.002G210000 ID=Potri.002G210000.1.v4.1 annot-version=v4.1 MSEKAKFFSRSLFFLITISIFLLILSSFSLVQFPGTHFIPRSVFKLILVNSTSFFLKPNAQTELVKFPFFSSTDTNLSMRCGSLSCPNTNMGASRCYRNK TCGRNQALRKLKVFVYDLPPEFHFGLLGWKGNTNQTWPNVDSHSRIPPYPGGLNLQHSVEYWLTLDLLASNTPKVGTAVRVQNSSQADIVFVPFFSSLSY NRHSKLHGKEKVSVNKMLQTKLVQFLTARDEWKRFGGNDHLIVAHHPNSMLHARKKLGSAMFVLADFGRYPVEIANLGKDIIAPYKHVVRTIPSGESAQF DRRPILMHFQGAIYRKDGGAIRQELYYLLKDEKDVHFTFGTYRGNGIKKAAQGMASSKFCLNIAGDTPSSNRLFDAIASHCVPVIISDDIELPFEDVLDY SEFCLFVRASDAVKKGYLLDLLRGIEKDQWTKLWERLKEIAPHFEYSYPSQPGDAVDMVWKAVLRKTSSVQFKRHRKNRYARPEAFLKRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74680			Exostosin family protein (.1)		Potri.002G210000 [exp]	0	1
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.005G040400 [exp]	2.00	0.8343	Pt-HPT2.3
AT3G46540			ENTH/VHS family protein (.1)		Potri.009G030500 [exp]	3.16	0.8131
AT3G06890			unknown protein		Potri.008G221000 [exp]	5.74	0.8295
AT5G18850			unknown protein		Potri.010G026900 [exp]	6.92	0.7480
AT1G78560			Sodium Bile acid symporter fam...		Potri.011G103200 [exp]	7.07	0.7623
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G058501 [exp]	7.48	0.7810
AT3G13000			Protein of unknown function, D...		Potri.006G216800 [exp]	8.12	0.7884
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Potri.009G064950 [exp]	9.38	0.8228
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.010G179400 [exp]	10.24	0.7529
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.011G032100 [exp]	18.54	0.7713

Compare expression of checked genes

Potri.002G210000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.