Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02940 122 / 3e-33 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT2G48080 117 / 2e-31 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT1G14710 86 / 7e-20 hydroxyproline-rich glycoprotein family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137700 [exp] 181 / 6e-55 AT4G02940 542 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.010G102100 [exp] 78 / 3e-17 AT1G14710 421 / 3e-139 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.008G138900 [exp] 77 / 8e-17 AT1G14710 423 / 6e-140 hydroxyproline-rich glycoprotein family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027990 [exp] 130 / 8e-36 AT4G02940 535 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10029637 [exp] 126 / 2e-34 AT4G02940 503 / 4e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10042669 [exp] 124 / 8e-34 AT4G02940 498 / 5e-172 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10008166 [exp] 122 / 4e-33 AT4G02940 511 / 2e-177 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G210732.1 pacid=42776822 polypeptide=Potri.002G210732.1.p locus=Potri.002G210732 ID=Potri.002G210732.1.v4.1 annot-version=v4.1 ATGGCAGCAGGGCCAGTATCGCCGAAGGATCACCAAGCTACTCCACCAGTGGTGCCGGTGCCGATGATGATGGAGGACGTGATTGCTAAGGACGTTATTC TAGCCTGGTTCCGCGAGGAATTCGCAGCGGCTAACGCCATAATCGATGCATTGTGTAGCCACTTGGCACAGCTGGGTTCAGGATCCGAGTACGAAGCGGT GTTCGCGGCCATTCATCGGAGGAGGCTTAACTGGATCCCTGTGCTCCAGATGCAGAAGTACCATTCCATTGCTGACGTGGCTTTGAAGCTAAAGCGAGTG ACTGAGACCAAACTGGAATCAGCCGGAAACATGACTGGTGAAGTCAGCGACGAAAAAGTAAAAATTAGGGTGGTAAATGGTCATGTTGTTGAGGGAGAGG AGGAGGATGATTCACCTGATAGTGATATTACTGATTCAGGCAAGTGTGTGTGTGTATTTCTCTTTATCATATATTCAACTTAA
AA sequence Show only first row Show all	>Potri.002G210732.1 pacid=42776822 polypeptide=Potri.002G210732.1.p locus=Potri.002G210732 ID=Potri.002G210732.1.v4.1 annot-version=v4.1 MAAGPVSPKDHQATPPVVPVPMMMEDVIAKDVILAWFREEFAAANAIIDALCSHLAQLGSGSEYEAVFAAIHRRRLNWIPVLQMQKYHSIADVALKLKRV TETKLESAGNMTGEVSDEKVKIRVVNGHVVEGEEEDDSPDSDITDSGKCVCVFLFIIYST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Potri.002G210732 [exp]	0	1
AT3G21710			unknown protein		Potri.014G151900 [exp]	2.82	0.8243
AT1G75090			DNA glycosylase superfamily pr...		Potri.002G133800 [exp]	2.82	0.8225
AT1G16670			Protein kinase superfamily pro...		Potri.008G040800 [exp]	12.00	0.8500
AT4G12470		AZI1	azelaic acid induced 1 (.1)		Potri.002G200100 [exp]	13.85	0.7544
AT1G34300			lectin protein kinase family p...		Potri.006G091400 [exp]	28.54	0.8041
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Potri.018G131200 [exp]	29.74	0.8238
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.014G101100 [exp]	40.74	0.6962
AT1G80120			Protein of unknown function (D...		Potri.016G143500 [exp]	42.21	0.8039
AT4G16807			unknown protein		Potri.003G080700 [exp]	43.47	0.7193
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166666 [exp]	44.45	0.7905

Compare expression of checked genes

Potri.002G210732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.