Plant FIBer expression Database

Potri.002G212400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02980 277 / 6e-96 ABP1 endoplasmic reticulum auxin binding protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029633
[exp]
302 / 5e-106 AT4G02980 273 / 2e-94 endoplasmic reticulum auxin binding protein 1 (.1)
Lus10027985
[exp]
296 / 9e-104 AT4G02980 269 / 8e-93 endoplasmic reticulum auxin binding protein 1 (.1)
Lus10042673
[exp]
290 / 4e-99 AT4G02980 259 / 1e-86 endoplasmic reticulum auxin binding protein 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF07883 Cupin_2 Cupin domain
Representative CDS sequence
>Potri.002G212400.1 pacid=42779808 polypeptide=Potri.002G212400.1.p locus=Potri.002G212400 ID=Potri.002G212400.1.v4.1 annot-version=v4.1
ATGAGGAGGATGAGCGGTGTGCTTGTGCTCATTTTTTACATTTTAAGTTTGCTTCTTCCTCTCCCAACCACTACAGCTTCTTCCTGTTGTTCTATCAAAG
GGTTGCCACTTGTGAGGAATATCAGTGAGCTTCCACAGGATAACTATGGAAGGGGAGGTTTGTCTCATATCACTCTTGCTGGTTCTGCCATGCATGGATT
GAAAGAGGTAGAGGTATGGCTTCAAACATTTTCTCCAGGCTCGCGCACTCCAATCCACAGGCATTCTTGTGAAGAAATATTTGTTGTCCTCAAGGGAAGT
GGAACTCTCTATCTTGCATCAAGTTCACACGAGAAGTATCCTGGAAAGCCTCAAGAATATTTTGTGTTTGCCAATAGTACATTTCATATTCCTGTCAATG
ATGTTCACCAGGTCTGGAATACCAATGAACATGAGGATTTGCAAATGCTTGTCATAATATCTCGCCCACCAGTTAAAGTGTTCATTTATGAGGACTGGTT
CATGCCCCATACTGCAGCAAAGTTGAAGTTTCCCTATTACTGGGATGAGCAATGCCTCCTAGAACCTCCAAAAGATGAACTTTGA
AA sequence
>Potri.002G212400.1 pacid=42779808 polypeptide=Potri.002G212400.1.p locus=Potri.002G212400 ID=Potri.002G212400.1.v4.1 annot-version=v4.1
MRRMSGVLVLIFYILSLLLPLPTTTASSCCSIKGLPLVRNISELPQDNYGRGGLSHITLAGSAMHGLKEVEVWLQTFSPGSRTPIHRHSCEEIFVVLKGS
GTLYLASSSHEKYPGKPQEYFVFANSTFHIPVNDVHQVWNTNEHEDLQMLVIISRPPVKVFIYEDWFMPHTAAKLKFPYYWDEQCLLEPPKDEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02980 ABP1 endoplasmic reticulum auxin bi... Potri.002G212400
[exp]
0 1
AT5G03080 Phosphatidic acid phosphatase ... Potri.016G086700
[exp]
3.87 0.7826
AT3G59280 TXR1 THAXTOMIN A RESISTANT 1, Prote... Potri.014G151200
[exp]
4.00 0.8701 TXR1.1
AT5G35080 unknown protein Potri.006G061600
[exp]
4.24 0.7763
AT3G45770 Polyketide synthase, enoylredu... Potri.001G233300
[exp]
5.83 0.7766
AT3G15350 Core-2/I-branching beta-1,6-N-... Potri.001G399500
[exp]
7.74 0.8135
AT1G02020 nitroreductase family protein ... Potri.002G146100
[exp]
9.00 0.8193
AT3G17611 ATRBL14 RHOMBOID-like protein 14 (.1.2... Potri.010G004600
[exp]
9.16 0.8301
AT5G10700 Peptidyl-tRNA hydrolase II (PT... Potri.018G008000
[exp]
11.04 0.7144
AT5G67590 FRO1 FROSTBITE1, NADH-ubiquinone ox... Potri.002G117800
[exp]
11.31 0.8135
AT3G56830 Protein of unknown function (D... Potri.002G146000
[exp]
12.24 0.8114

Potri.002G212400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.