Plant FIBer expression Database

MBD911 (Potri.002G212600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol MBD911
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G63030 221 / 3e-74 MBD4 methyl-CPG-binding domain 4 (.1)
AT4G22745 209 / 3e-69 MBD1 methyl-CPG-binding domain 1 (.1)
AT5G35330 131 / 5e-38 MBD2, MBD02, ATMBD2 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
AT4G00416 105 / 4e-29 MBD3 methyl-CPG-binding domain 3 (.1)
AT5G35338 89 / 1e-22 MBD12 methyl-CPG-binding domain 12 (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G137100
[exp]
352 / 5e-126 AT3G63030 223 / 4e-75 methyl-CPG-binding domain 4 (.1)
Potri.006G077600
[exp]
124 / 8e-35 AT5G35330 257 / 6e-85 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
Potri.018G145500
[exp]
122 / 1e-33 AT5G35330 282 / 2e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
Potri.018G146700
[exp]
120 / 4e-33 AT5G35330 286 / 6e-96 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027980
[exp]
241 / 6e-82 AT3G63030 206 / 4e-68 methyl-CPG-binding domain 4 (.1)
Lus10008176
[exp]
240 / 1e-81 AT3G63030 204 / 3e-67 methyl-CPG-binding domain 4 (.1)
Lus10029631
[exp]
236 / 2e-80 AT3G63030 208 / 1e-69 methyl-CPG-binding domain 4 (.1)
Lus10042674
[exp]
233 / 2e-79 AT3G63030 207 / 4e-69 methyl-CPG-binding domain 4 (.1)
Lus10017146
[exp]
129 / 3e-36 AT5G35330 283 / 5e-95 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
Lus10021593
[exp]
127 / 9e-36 AT5G35330 283 / 1e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0081 MBD-like PF01429 MBD Methyl-CpG binding domain
CL0081 PF07496 zf-CW CW-type Zinc Finger
Representative CDS sequence
>Potri.002G212600.1 pacid=42780219 polypeptide=Potri.002G212600.1.p locus=Potri.002G212600 ID=Potri.002G212600.1.v4.1 annot-version=v4.1
ATGGCACTGAAAGAGCGTAGTCCTGAAACCCCTAAAACATCCCCCAAGAATCCACGAGTTGCCGTGCGATCAATTGATACATATGCTGCACAATGCGACA
AATGCTTAAAATGGAGGGTGATTCCGACTGAAGAAGAGTACGAGGAGATAAGAAGTAAAATGGAAGAGAATCCATATGTTTGTGACAGAAAACCTGGCGT
ATCTTGTGATGATCCTGCTGACATTGAGTACAATGCCACTCGAACCTGGGTCATTGATAGGCCTGGTGTTCCCAAGACTCCGGAAGGTTTTAAAAGGAGC
TTGGTGCTTAGACGTGATTTCTCAAAAATGGATGCTTACTATATCACTCCCACAGGAAAGAAGCTGAGAACACGCAATGAGATAGCAGCATTTATAGAAG
CAAATCCAAAATACAAAGATGTAAACCTCTCTGCCTTCAATTTTACTTCTCCAAAGGTAATGGAAGACACCATCCCTGAAGATGCTGTGAGAAAGGTTCC
CTCTAGTGCAAATGGCAACAAAAAGAAGGCATTAAAGGATTCAGCTTGA
AA sequence
>Potri.002G212600.1 pacid=42780219 polypeptide=Potri.002G212600.1.p locus=Potri.002G212600 ID=Potri.002G212600.1.v4.1 annot-version=v4.1
MALKERSPETPKTSPKNPRVAVRSIDTYAAQCDKCLKWRVIPTEEEYEEIRSKMEENPYVCDRKPGVSCDDPADIEYNATRTWVIDRPGVPKTPEGFKRS
LVLRRDFSKMDAYYITPTGKKLRTRNEIAAFIEANPKYKDVNLSAFNFTSPKVMEDTIPEDAVRKVPSSANGNKKKALKDSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G63030 MBD4 methyl-CPG-binding domain 4 (.... Potri.002G212600
[exp]
0 1 MBD911
AT2G47580 U1A spliceosomal protein U1A (.1) Potri.002G203600
[exp]
2.44 0.8281
AT3G12580 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN... Potri.010G206600
[exp]
9.84 0.8352
AT4G03320 AtTic20-IV, TIC... translocon at the inner envelo... Potri.019G108800
[exp]
20.85 0.8135
AT5G13070 MSF1-like family protein (.1) Potri.001G018500
[exp]
21.65 0.7387
AT5G14140 C2H2ZnF zinc ion binding;nucleic acid ... Potri.001G329300
[exp]
21.72 0.7434
AT2G30000 PHF5-like protein (.1) Potri.009G072300
[exp]
22.00 0.8118
AT4G02450 HSP20-like chaperones superfam... Potri.005G199700
[exp]
28.98 0.7984
AT3G25230 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rota... Potri.002G248300
[exp]
32.07 0.8033
AT1G66080 unknown protein Potri.004G082100
[exp]
33.67 0.8072
AT4G15470 Bax inhibitor-1 family protein... Potri.010G028900
[exp]
35.94 0.7635

Potri.002G212600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.