Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65410 483 / 2e-172 ABCI13, TGD3, ATNAP11 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) AT1G67940 103 / 1e-25 ABCI17, AtSTAR1, ATNAP3 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) AT1G27940 105 / 1e-24 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 105 / 2e-24 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G62150 101 / 3e-23 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 100 / 1e-22 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G31770 96 / 1e-21 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT5G46540 95 / 5e-21 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT2G13610 94 / 8e-21 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT1G02530 94 / 1e-20 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137000 [exp] 597 / 0 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.018G132000 [exp] 117 / 9e-31 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.011G133800 [exp] 100 / 7e-23 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.009G051300 [exp] 97 / 1e-21 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G417600 [exp] 97 / 1e-21 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.013G117700 [exp] 94 / 5e-21 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.003G094400 [exp] 93 / 2e-20 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.018G141300 [exp] 92 / 3e-20 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G354900 [exp] 92 / 3e-20 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020188 [exp] 516 / 0 AT1G65410 500 / 2e-179 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10026992 [exp] 488 / 3e-174 AT1G65410 476 / 2e-169 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10035453 [exp] 113 / 1e-28 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10043069 [exp] 99 / 2e-22 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10004583 [exp] 99 / 2e-22 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10036616 [exp] 98 / 2e-22 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10035834 [exp] 99 / 4e-22 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10038049 [exp] 98 / 4e-22 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009988 [exp] 98 / 5e-22 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10032911 [exp] 95 / 6e-21 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.002G212701.1 pacid=42779021 polypeptide=Potri.002G212701.1.p locus=Potri.002G212701 ID=Potri.002G212701.1.v4.1 annot-version=v4.1 ATGCTTACAGAAAGCTTGATCTCATCCGGTTCAATGCTATTATCTACGCTTTGCATACCAAATGGGTATGCTCCCTCCACTGGGACTGGGTTACCATTCA ACACTTCACTTTGTTTTAGAAAGAATCTGAGAAATATTGTTTGTGCTTGTGTGGCACCTCCTCCACCCAACAACATAGGAGGCGATGGATTTGCTGCAAC CAAATTCATTGATTCATATAAAGCAGAGAAATTAAGCACCATAGGTGATCTGGAGGATGGTTCTGATGTTCTCATCGAATGCAGAAATGTTTACAAGTCA TTTGGAGAGAAGCATATATTAAGAGGTGTGAGCTTCAAGATTAGACATGGTGAAGCAGTTGGAATAATTGGGCCTTCTGGTACTGGTAAATCTACAATTT TGAAGATTATTGCTGGACTTCTTGCTCCGGACAGGGGCGAGGTTTATATTCATGGTAAAAAGAGAGATGGTTTGATCAGCGATGAGGGGATTTCTGGGCT TCGAATTGGATTGGTGTTTCAAAGTGCAGCACTTTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTCCTTTTATATGAAAATTCTAGCATGTTGGAG GAACAAATTGCTGAACTTGTGACGGAAACTTTGGCCCAAGTTGGTTTAAAGGGAGTGGAGGACAGGTTACCTTCTGAGTTATCTGGTGGAATGAAGAAAA GAGTTGCTTTAGCTCGGTCTATAATTTTTGATACCACAAATGAAACAATTGAGCCAGAGGTACTCTTATATGATGAACCAACAGCCGGACTCGATCCAAT AGCATCTACCGTAGTTGAAGATCTCATCCGCTCTGTTCACATGAAAGGTGAGGATGGGAAACCTGAGAAGATTGCGTCTTATGTGGTGGTTACTCATCAA CATAGTACCATTAGAAGGGCTGTTGACAGGTTGTTGTTTCTACATGAAGGAAAGGTTGTTTGGCAAGGAATGACTGATGAATTCATGACATCAGCCAATC CAATTGTTCAACAGTTTGCATCTGGCAGCCTTGATGGGCCTATTAAATACTAG
AA sequence Show only first row Show all	>Potri.002G212701.1 pacid=42779021 polypeptide=Potri.002G212701.1.p locus=Potri.002G212701 ID=Potri.002G212701.1.v4.1 annot-version=v4.1 MLTESLISSGSMLLSTLCIPNGYAPSTGTGLPFNTSLCFRKNLRNIVCACVAPPPPNNIGGDGFAATKFIDSYKAEKLSTIGDLEDGSDVLIECRNVYKS FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDRGEVYIHGKKRDGLISDEGISGLRIGLVFQSAALFDSLTVRENVGFLLYENSSMLE EQIAELVTETLAQVGLKGVEDRLPSELSGGMKKRVALARSIIFDTTNETIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMKGEDGKPEKIASYVVVTHQ HSTIRRAVDRLLFLHEGKVVWQGMTDEFMTSANPIVQQFASGSLDGPIKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Potri.002G212701 [exp]	0	1
AT4G32272			Nucleotide/sugar transporter f...		Potri.006G255400 [exp]	34.17	0.6387
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Potri.014G071100 [exp]	36.87	0.6373
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.001G154600 [exp]	172.64	0.5910

Compare expression of checked genes

Potri.002G212701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.