Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26060 530 / 0 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G32990 431 / 4e-152 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 102 / 7e-24 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT3G49660 96 / 2e-22 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 97 / 7e-22 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G52820 94 / 3e-21 WD-40 repeat family protein / notchless protein, putative (.1) AT4G02730 93 / 3e-21 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 94 / 1e-20 TAF5 TBP-associated factor 5 (.1) AT1G52360 79 / 1e-15 Coatomer, beta' subunit (.1.2) AT3G15980 77 / 3e-15 Coatomer, beta' subunit (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G221000 [exp] 639 / 0 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G136700 [exp] 168 / 8e-52 AT2G26060 156 / 2e-47 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G221150 [exp] 150 / 2e-45 AT2G26060 124 / 1e-35 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 100 / 7e-24 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G050100 [exp] 100 / 3e-23 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 99 / 2e-22 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.018G020200 [exp] 97 / 9e-22 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 93 / 2e-21 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 89 / 8e-20 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017045 [exp] 545 / 0 AT2G26060 486 / 5e-174 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021365 [exp] 535 / 0 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004167 [exp] 109 / 3e-26 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 109 / 3e-26 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024447 [exp] 102 / 9e-24 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10024972 [exp] 101 / 3e-23 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10006916 [exp] 99 / 3e-23 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 96 / 3e-22 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10010384 [exp] 91 / 5e-20 AT5G67320 572 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10007449 [exp] 91 / 1e-19 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.002G212800.1 pacid=42777901 polypeptide=Potri.002G212800.1.p locus=Potri.002G212800 ID=Potri.002G212800.1.v4.1 annot-version=v4.1 ATGGATTTGTACGACGACGGCAATATGATACTGAAGGAGATTCAAACACTTGAAGGACACACCGATAGGGTTTGGAGCTTAGCTTGGAATCCAGCCACAG CAACTTCTCCTGTCTTCGCTTCTTGTAGCGGCGATAAGACTGTTCGAATCTGGGAGCAGACTCCTTCCACTCGCCTTTGGCACTGCAAGGCAGTTCTGGA AGAAACACACACTAGAACTGTTCGGTCGTGTGCCTGGTCACCTTCTGGGAAATTGTTGGCAACCGCCAGCTTTGATGCCACCACTTCCATTTGGGAAAAT ATTAGCGGTGATTTTGAATGTGTTTCTACTTTAGAGGGTCATGAAAATGAAGTGAAAAGTGTGTCTTGGAATGCATCTGGTTCGTTCCTTGCGACGTGTA GTCGGGATAAGACTGTTTGGATTTGGGAAGTGATGCCTGGGAATGAATTCGAGTGTGCTTCGGTTTTGCAAGGACACACACAAGATGTTAAAATGGTTAA ATGGCATCCAACTATGGATGTTTTGTTTTCTTGTAGTTATGATAATACTGTTAAGGTTTGGGCTGAGGATGGCACTGGTGATTGGCATTGTGTTCAAACC TTAGGTGAATCTAACAATGGTCACTCTTCTACTGTCTGGGCACTTTCTTTTAACGCTGAAGGAGACAGAATGGTTACTTGTAGTGATGATCTTACCCTAA AAATATGGGAAACAGATGTTGGGAGGATGGTGTTGGGTGATGACCACGCTCCTTGGAATCATCTTTGCACTCTCTCAGGTTATCATGATCGAACGATCTT TTCAGTTCATTGGTCAAGGGAAGGTATTATAGCAAGCGGAGCAGCTGATGATGGTCTACGGTTTTTTCTGGAGAACAAGGATGGTTTGGTTGACGGTCCT TCATATAAACTGTTGCTGAAAAGGGAAAAGGCTCACAATATGGACATAAACTCAGTGCAATGGGGCCCTGGGGAAACCCGGCTACTTGCTTCCACAAGTG ATGATGGGAAAATAAAGATATGGGAACTGGCAACTCTAACCTGA
AA sequence Show only first row Show all	>Potri.002G212800.1 pacid=42777901 polypeptide=Potri.002G212800.1.p locus=Potri.002G212800 ID=Potri.002G212800.1.v4.1 annot-version=v4.1 MDLYDDGNMILKEIQTLEGHTDRVWSLAWNPATATSPVFASCSGDKTVRIWEQTPSTRLWHCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTSIWEN ISGDFECVSTLEGHENEVKSVSWNASGSFLATCSRDKTVWIWEVMPGNEFECASVLQGHTQDVKMVKWHPTMDVLFSCSYDNTVKVWAEDGTGDWHCVQT LGESNNGHSSTVWALSFNAEGDRMVTCSDDLTLKIWETDVGRMVLGDDHAPWNHLCTLSGYHDRTIFSVHWSREGIIASGAADDGLRFFLENKDGLVDGP SYKLLLKREKAHNMDINSVQWGPGETRLLASTSDDGKIKIWELATLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Potri.002G212800 [exp]	0	1
AT3G57990			unknown protein		Potri.016G046900 [exp]	11.91	0.8422
AT2G47820			unknown protein		Potri.008G210200 [exp]	14.76	0.8359
AT1G08410			P-loop containing nucleoside t...		Potri.009G017000 [exp]	19.89	0.8090
AT5G49400			zinc knuckle (CCHC-type) famil...		Potri.008G107100 [exp]	20.34	0.7846
AT2G02370			SNARE associated Golgi protein...		Potri.001G078700 [exp]	22.97	0.8204
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.003G203000 [exp]	26.73	0.8071
AT5G01230			S-adenosyl-L-methionine-depend...		Potri.019G056300 [exp]	28.77	0.8355
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.001G213800 [exp]	29.12	0.8135	RHF2.3
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.011G078300 [exp]	31.63	0.8179
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.016G036500 [exp]	31.78	0.8095

Compare expression of checked genes

Potri.002G212800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.