Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 724 / 0 Major facilitator superfamily protein (.1.2) AT5G18840 591 / 0 Major facilitator superfamily protein (.1) AT3G05150 555 / 0 Major facilitator superfamily protein (.1) AT1G54730 508 / 3e-178 Major facilitator superfamily protein (.1.2.3) AT1G08920 441 / 6e-152 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT1G08930 440 / 5e-151 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G20460 434 / 8e-149 Major facilitator superfamily protein (.1) AT3G05165 432 / 3e-148 Major facilitator superfamily protein (.1.2.3.4.5) AT1G75220 428 / 1e-146 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT3G05160 427 / 1e-146 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136600 [exp] 747 / 0 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 602 / 0 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 533 / 0 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 464 / 5e-161 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G040000 [exp] 453 / 1e-156 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.005G037000 [exp] 443 / 1e-152 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 436 / 6e-150 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.007G024300 [exp] 421 / 1e-143 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.013G027800 [exp] 419 / 4e-143 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008183 [exp] 722 / 0 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 696 / 0 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 682 / 0 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008182 [exp] 679 / 0 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 651 / 0 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 650 / 0 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 649 / 0 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042676 [exp] 613 / 0 AT2G48020 603 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 592 / 0 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10035354 [exp] 515 / 0 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.002G212900.1 pacid=42778594 polypeptide=Potri.002G212900.1.p locus=Potri.002G212900 ID=Potri.002G212900.1.v4.1 annot-version=v4.1 ATGGGAATCCAAGAGGACCTAGAGCAGTGTAAGAATCGTGCTGAGCATGAAGAGGTAAGAGAACCACTCATGGACAAGAAAAATCAATCAGGCGAACAAG ATGGATCTTTTGCTCAGAGTAGCAGCAAAGAAAGTGCTTGGATGGTTTACCTCAGCACTTTTGTTGCAGTCTGTGGCTCTTTCGCATTTGGCTCATGTGC AGGCTATTCATCACCCACAGAAAATGCTGTCAGGGAAGATCTCTCTCTATCTCTAGCAGAGTATTCCGTGTTTGGTTCAATATTGACATTCGGAGCAATG ATTGGTGCAATCACAAGTGGGCCCATTGCTGATTTCATTGGTCGGAAAGGGGCGCTGAGAGTGGCTACCAGCTTCTGTATTGCCGGATGGCTAGCCATCT ACTTTGCTCAGGGGGTTCTGGCGTTGGACCTCGGGAGACTGGCAACAGGTTATGGAATGGGAGTCTTTTCTTATGTGGTACCTGTTTTTATTGCTGAAAT TGCACCCAAGAATCTTAGAGGAGCACTAACAGCTACAAATCAGCTTATGATCTGCGGTGGAGTGTCTGTTGCATTCATAATAGGAACCGTGCTGACATGG AGGGCTTTGGCATTGACTGGGCTTGTTCCTTGTGCAATTCTGGTTTTTGGCCTGTTTCTGATTCCCGAATCTCCCAGATGGCTGGCAAAGAGAGGACGTG AAGAAGAGTTTCAAACAGCTCTACAAAAGCTTCGTGGCAAGGAAGCTGATATATATCAGGAGGCAACTGAAATCAAGGAGTACATAGAAACTCTTGAACG GCTCCCAAAAGCCAGATTCCTAGATTTGTTTCAAAGAAGATACCTCCGCTCAGTCATTATAGGAGTAGGACTGATGGTCTTTCAACAATTTGGAGGAATC AATGGGGTCTGCTTTTATGTCAGCAATATTTTTGAGTCAGCAGGATTTTCTCCCAGTCTTGGAACCATAATCTATGCCATTCTTCAGGTTGTGGTTACCG CCCTCAACACAATCGTAATAGATAAAGCTGGAAGAAAGCCTCTATTACTGGTTTCTGCATCAGGACTGATTCTTGGCTGTTTAATAACTGCGATTTCATT CTACCTAAAGGTTAATGAATTGGCAGTCAAATCAGTCCCGGCACTTACTTTAACTGGCATACTGCTATATATCGGCTCATTTTCAGCAGGAATGGGTGCA GTTCCGTGGGTAATAATGTCTGAGATTTTTCCAATAAATATTAAGGGAGTGGCAGGAAGCTTAGCAACACTTGTGAACTGGTTTGGTGCATGGGCGATTT CCTACACTTACAACTACCTTATGTCCTGGAGCTCCTATGGTACCTTCATTCTTTATGCTGCAATCAACGCGCTGGCTATAGTGTTTGTGGTCATGGTGGT GCCAGAAACAAAAGGGAGAACTCTGGAGCAAATCCAAGCAGCCATTAATACATAG
AA sequence Show only first row Show all	>Potri.002G212900.1 pacid=42778594 polypeptide=Potri.002G212900.1.p locus=Potri.002G212900 ID=Potri.002G212900.1.v4.1 annot-version=v4.1 MGIQEDLEQCKNRAEHEEVREPLMDKKNQSGEQDGSFAQSSSKESAWMVYLSTFVAVCGSFAFGSCAGYSSPTENAVREDLSLSLAEYSVFGSILTFGAM IGAITSGPIADFIGRKGALRVATSFCIAGWLAIYFAQGVLALDLGRLATGYGMGVFSYVVPVFIAEIAPKNLRGALTATNQLMICGGVSVAFIIGTVLTW RALALTGLVPCAILVFGLFLIPESPRWLAKRGREEEFQTALQKLRGKEADIYQEATEIKEYIETLERLPKARFLDLFQRRYLRSVIIGVGLMVFQQFGGI NGVCFYVSNIFESAGFSPSLGTIIYAILQVVVTALNTIVIDKAGRKPLLLVSASGLILGCLITAISFYLKVNELAVKSVPALTLTGILLYIGSFSAGMGA VPWVIMSEIFPINIKGVAGSLATLVNWFGAWAISYTYNYLMSWSSYGTFILYAAINALAIVFVVMVVPETKGRTLEQIQAAINT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G48020			Major facilitator superfamily ...		Potri.002G212900 [exp]	0	1
AT3G53990			Adenine nucleotide alpha hydro...		Potri.016G104600 [exp]	4.69	0.8897
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Potri.010G034300 [exp]	6.32	0.8899	NTL1.1
AT1G25520			Uncharacterized protein family...		Potri.008G117900 [exp]	9.16	0.8957
AT5G61510			GroES-like zinc-binding alcoho...		Potri.004G233800 [exp]	11.74	0.8483	Pt-TED2.2
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Potri.016G124700 [exp]	13.52	0.8997	Pt-SOF.3
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.004G049800 [exp]	13.78	0.8960	Pt-GRX.2
AT2G45900			Phosphatidylinositol N-acetygl...		Potri.001G103400 [exp]	14.07	0.9128
AT5G47470			Nodulin MtN21 /EamA-like trans...		Potri.001G157600 [exp]	15.96	0.8815
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Potri.001G039900 [exp]	22.09	0.9049
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119066 [exp]	30.33	0.8791

Compare expression of checked genes

Potri.002G212900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.