Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63010 576 / 0 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 527 / 0 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 521 / 0 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 209 / 4e-65 ATCXE18 carboxyesterase 18 (.1) AT5G16080 138 / 9e-38 ATCXE17 carboxyesterase 17 (.1) AT5G62180 132 / 1e-35 ATCXE20 carboxyesterase 20 (.1) AT1G68620 131 / 3e-35 alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 126 / 1e-33 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G03550 124 / 7e-33 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 119 / 1e-30 ATCXE13 carboxyesterase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135900 [exp] 674 / 0 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 557 / 0 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 555 / 0 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.019G014302 [exp] 258 / 5e-84 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.001G459400 [exp] 226 / 1e-71 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.004G092500 [exp] 226 / 2e-71 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.017G113700 [exp] 149 / 1e-41 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.004G101400 [exp] 147 / 2e-41 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.009G155800 [exp] 147 / 2e-41 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027969 [exp] 601 / 0 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10000928 [exp] 523 / 0 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 521 / 0 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10018963 [exp] 335 / 3e-115 AT5G27320 365 / 3e-127 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10008189 [exp] 222 / 8e-73 AT3G63010 206 / 4e-67 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10039162 [exp] 226 / 1e-71 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10013774 [exp] 216 / 3e-67 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10015989 [exp] 155 / 3e-44 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 153 / 1e-43 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 153 / 1e-43 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.002G213100.1 pacid=42780040 polypeptide=Potri.002G213100.1.p locus=Potri.002G213100 ID=Potri.002G213100.1.v4.1 annot-version=v4.1 ATGGCTGGTAGCAATGAAGTCAACCTAAATGAATCCAAGAGGGTTGTTCCGCTAAACACATGGGTCCTCATTTCCAATTTCAAGCTTGCATATAATCTCC TTCGCCGCCCGGATGGGACCTTTAACCGCGAATTGGCAGAGTTCCTTGAACGAAAGGTCCAGGCCAACACCATCCCAGTTGATGGGGTTTTCTCCTTTGA TCATGTTGACAGAACCACGGGCCTCCTTAACCGGGTTTACCAACCTGCCCCTGAAAGTGAGGCGCAATGGGGCATTGTAGAACTTGAAAAGCCCTTGAAC ACTACGGAGGTTGTTCCAGTCATAATCTTCTTCCACGGTGGAAGCTTTACTCATTCCTCTGCTAATAGTGCTATTTATGACACCTTTTGTCGCCGCCTTG TCAGCGCTTGCAAGGCTGTTGTGGTGTCTGTTAATTATCGTCGATCACCTGAGTATCGATACCCTTGCGCGTATGATGATGGCTGGACGGCTCTTAAGTG GGTTAAATCTAGAACTTGGCTTCAAAGTGGAAAGGATTCTAAGGTTCATGTCTATTTGGCTGGCGATAGTTCAGGTGGTAATATAGCTCACCATGTTGCC GCGAGAGCGGCGGAGGAAGAAATCGATGTGTTGGGTAATATTCTTCTTCACCCAATGTTTGGTGGTCAACAGAGAACAGAATCAGAGAAGATATTAGATG GCAAGTACTTTGTTACAATTCAAGACCGCGACTGGTATTGGAGAGCATATCTACCTGAAGGAGAAGATAGGGACCATCCAGCATGTAATATATTTGGTCC AAGGGGGAAAAAGCTTGAAGGACTGGAGTTCCCTAAAAGTCTAGTTGTTGTGGCTGGTTTCGATCTCGTTCAAGACTGGCAATTGGCATATGTTGAAGGA CTCCAGAGAGCTGGCCATGAAGTGAAACTTCTCTATCTAAAACAGGCCACAATAGGGTTCTACTTCCTGCCAAATAATGATCACTTCTATTGTCTCATGG AGGAGATAAAAAAGTTTGTGAATTCTAACTGTTAA
AA sequence Show only first row Show all	>Potri.002G213100.1 pacid=42780040 polypeptide=Potri.002G213100.1.p locus=Potri.002G213100 ID=Potri.002G213100.1.v4.1 annot-version=v4.1 MAGSNEVNLNESKRVVPLNTWVLISNFKLAYNLLRRPDGTFNRELAEFLERKVQANTIPVDGVFSFDHVDRTTGLLNRVYQPAPESEAQWGIVELEKPLN TTEVVPVIIFFHGGSFTHSSANSAIYDTFCRRLVSACKAVVVSVNYRRSPEYRYPCAYDDGWTALKWVKSRTWLQSGKDSKVHVYLAGDSSGGNIAHHVA ARAAEEEIDVLGNILLHPMFGGQQRTESEKILDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNIFGPRGKKLEGLEFPKSLVVVAGFDLVQDWQLAYVEG LQRAGHEVKLLYLKQATIGFYFLPNNDHFYCLMEEIKKFVNSNC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Potri.002G213100 [exp]	0	1
					Potri.002G091600 [exp]	1.00	0.9373
AT3G22560			Acyl-CoA N-acyltransferases (N...		Potri.008G154800 [exp]	1.41	0.9290
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Potri.008G209300 [exp]	3.00	0.9099
AT1G75388		CPuORF5	conserved peptide upstream ope...		Potri.005G119400 [exp]	3.74	0.8926
					Potri.005G129350 [exp]	3.74	0.9165
AT3G59880			unknown protein		Potri.007G145500 [exp]	4.00	0.9241
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003500 [exp]	4.89	0.9183
AT2G38790			unknown protein		Potri.008G025200 [exp]	5.47	0.9189
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412300 [exp]	7.14	0.8874
AT2G42360			RING/U-box superfamily protein...		Potri.019G091400 [exp]	8.30	0.9259

Compare expression of checked genes

Potri.002G213100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.