Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03430 97 / 1e-22 Ankyrin repeat family protein (.1) AT1G07710 96 / 7e-21 Ankyrin repeat family protein (.1) AT5G60070 86 / 7e-18 ankyrin repeat family protein (.1) AT2G14255 81 / 4e-16 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G07270 74 / 5e-14 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1) AT1G05640 73 / 2e-13 Ankyrin repeat family protein (.1) AT5G57740 73 / 2e-13 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G20350 71 / 7e-13 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G26650 71 / 1e-12 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT5G02620 70 / 1e-12 ATANK1, ANK1 ankyrin-like1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062000 [exp] 169 / 1e-46 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 165 / 2e-45 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 113 / 7e-27 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 97 / 1e-22 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 98 / 1e-21 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 91 / 2e-19 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.017G135400 [exp] 82 / 3e-16 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.006G176600 [exp] 81 / 4e-16 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.004G083300 [exp] 81 / 9e-16 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003748 [exp] 466 / 1e-161 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10028039 [exp] 253 / 3e-80 AT3G02850 60 / 1e-17 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10020272 [exp] 172 / 1e-47 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 141 / 2e-37 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10007432 [exp] 92 / 2e-20 AT2G31800 69 / 3e-13 Integrin-linked protein kinase family (.1) Lus10015224 [exp] 80 / 1e-15 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 79 / 3e-15 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10019974 [exp] 76 / 2e-14 AT5G57740 630 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10005432 [exp] 76 / 2e-14 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015503 [exp] 76 / 3e-14 AT5G57740 614 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.002G213200.1 pacid=42779477 polypeptide=Potri.002G213200.1.p locus=Potri.002G213200 ID=Potri.002G213200.1.v4.1 annot-version=v4.1 ATGGACAGACTGGTAAAGGCAGACGTGAAGGAAGTGGAGATAGCATATAAGGGAAGTCAAAACTGCAGCACAACTTTCAGATTAACCAACCTTATGCACA CCATGTCTGTGGCAATCTCTTTGTCTACGACAAACCCTTCTGCTTTCTCTTTCGCACAGCCTTTCTCTATAATACCACCTTTGTCTTCCTCATCTTACAC AATTGTCCTCTCTCAGTTATCCGAACAGCCTCCTCTGTCTACTCCTCCTGATGCCATCTCTGTTAAATCATCCATGCTACCTACAGGCAAGGCTCATCAG GATGAACTCCGCCGACTGTTTTCAAAACCTGGACCCCATATTTTTAGAGACGCCACCATACCTGTCTACCTCGTGGGTCCCCAAGTTGCTGAATATATCA TCTCCAATCACACCCAAATTACTGATGTCTCCGGTTACTTCAACAGGGCTATTTGTAGATGTACCGGCTCCCAGATCACAGGACTGCTCAAATCTGCTGT GCCATCTGGTAATCTAAATTTGGTCACTAGCTTGATTGATCGCGGTGGTAATGTCAATTGCAAGGATTCAGAGGGACGGTCCTTGATCTCTCTAGCTGTT CAGGCTGGGCAGATTGATGTTGTTAAGGTTTTGACTGCTTCTGGATGTGTAATTGATGGCTCGATTGATAAAGTCTTGCACTATGCAGCAGCTATAAATA GAGTGGATTTGATGGATGTTCTGTGTGATAGTTTCGAAAATATTGAAGTAAATTCAGCTGATTTACGCGGTAGAACTCCAATTCATGTCGCTGCAAGCAG GGGCCATGTTGAAGTGATTAGGTTTTGTGTGAGTGCTGGAGGGAAAACTGGGGTTTTGGATCACGACGCGTCGAGCCCGCTTCATTTGGCAGCACAAAAA GGGCACTTAGAGACTACGGAGTATTTATTGGATTGTTCAGATTATTCTGTCAAGCATGCAGTGAACAAAGAAGGAAAAACTGCTTTCTCTATCGCAGTTG ATAATGGACATTCGCATTTGTATGATTTGTTGCATATGGGAGATGTTTTGCAAAGAGCAGCTAGAGTAGATGATGTGAATGGTATCAAGAGTTGCCTTGC AGAAGGGGCAGAGGTTAATAGAAGTGACCAGAATGGATGGACACCTTTGCATAGAGCTGCCTTTAAGGGAAGAATTGAGAGCGTTAAAGTGTTGCTTAAT CACGGAGCTCAAGTTAATGCTGTTGACAATGCTGGGTACACACCACTTCATTGTGCAGTTGAAGCAGGGCATATGCAGGTTGCTCTGTTGTTAGTTGCTC ATGGAGCTAGTGCAAAAGTGAAAAGTCTCAAGGGGATTGTGCCTCTGAATATGGATTGCTTTAAGAATCACCCTTCTCTAGTCAAGCCCTTGTGTCAAGA AGAAAAGAAAAGTGAAACTGAGGTATCTGTTTGCTGA
AA sequence Show only first row Show all	>Potri.002G213200.1 pacid=42779477 polypeptide=Potri.002G213200.1.p locus=Potri.002G213200 ID=Potri.002G213200.1.v4.1 annot-version=v4.1 MDRLVKADVKEVEIAYKGSQNCSTTFRLTNLMHTMSVAISLSTTNPSAFSFAQPFSIIPPLSSSSYTIVLSQLSEQPPLSTPPDAISVKSSMLPTGKAHQ DELRRLFSKPGPHIFRDATIPVYLVGPQVAEYIISNHTQITDVSGYFNRAICRCTGSQITGLLKSAVPSGNLNLVTSLIDRGGNVNCKDSEGRSLISLAV QAGQIDVVKVLTASGCVIDGSIDKVLHYAAAINRVDLMDVLCDSFENIEVNSADLRGRTPIHVAASRGHVEVIRFCVSAGGKTGVLDHDASSPLHLAAQK GHLETTEYLLDCSDYSVKHAVNKEGKTAFSIAVDNGHSHLYDLLHMGDVLQRAARVDDVNGIKSCLAEGAEVNRSDQNGWTPLHRAAFKGRIESVKVLLN HGAQVNAVDNAGYTPLHCAVEAGHMQVALLLVAHGASAKVKSLKGIVPLNMDCFKNHPSLVKPLCQEEKKSETEVSVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03430			Ankyrin repeat family protein ...		Potri.002G213200 [exp]	0	1
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.002G245400 [exp]	3.00	0.9014	RIN4.1
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.007G112700 [exp]	6.32	0.8885
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.018G079300 [exp]	7.48	0.9007
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.003G134900 [exp]	7.54	0.8980
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.001G033200 [exp]	8.12	0.8685
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.015G086800 [exp]	9.16	0.8837
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G006000 [exp]	9.79	0.8905
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.008G056400 [exp]	11.61	0.8917
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.009G042400 [exp]	13.74	0.8892
AT1G18390			Protein kinase superfamily pro...		Potri.015G044750 [exp]	14.69	0.8747

Compare expression of checked genes

Potri.002G213200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.