Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PP1.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03080 1439 / 0 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1) AT1G03445 828 / 0 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT2G27210 651 / 0 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G08420 642 / 0 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT5G59160 289 / 2e-90 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT3G46820 287 / 1e-89 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT2G29400 278 / 5e-86 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT2G39840 273 / 1e-84 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G27840 271 / 2e-83 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT5G43380 266 / 1e-81 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135800 [exp] 1601 / 0 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.001G215700 [exp] 654 / 0 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.009G016900 [exp] 650 / 0 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.001G245700 [exp] 288 / 7e-90 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.009G037700 [exp] 285 / 6e-89 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.013G045900 [exp] 280 / 1e-86 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 280 / 1e-86 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G060800 [exp] 276 / 1e-85 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.010G197600 [exp] 274 / 7e-85 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009783 [exp] 1276 / 0 AT2G27210 1281 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Lus10013357 [exp] 1058 / 0 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10024773 [exp] 898 / 0 AT4G03080 853 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10004100 [exp] 645 / 0 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10008369 [exp] 644 / 0 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10024772 [exp] 437 / 3e-148 AT4G03080 478 / 5e-165 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10016489 [exp] 281 / 1e-87 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004989 [exp] 277 / 5e-86 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004692 [exp] 277 / 7e-86 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 277 / 9e-86 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13854 [poplar] [flax] Kelch_5 Kelch motif CL0186 [poplar] [flax] PF16891 [poplar] [flax] STPPase_N Serine-threonine protein phosphatase N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G213300.2 pacid=42776730 polypeptide=Potri.002G213300.2.p locus=Potri.002G213300 ID=Potri.002G213300.2.v4.1 annot-version=v4.1 ATGGGATCCAAGCCATGGCTTCACCCAGCTCCCGCCTATCGGGCCTTGGAGACTTACTGGAGTTCTGATGATGATGCTCCTGGTCCTCGATGTAGCCACA CCTTGACTGCCGTTGCTGCTACCAAGTCTCATGGCCCTCGACTCATCCTCTTCGGTGGTGTCACCGCTATCGAGGGCGGCGCTTCCTCCGCTCCTGGAAT CAGATTGGATGGAGCCACTAATTCGGTTCATTCTTATGATGTTCTTACTAGGAAATGGACAAGAATACAAGCTGCTGGAGAGCCACCGTCTCCTAGGGCT GCGCACGCGGCAGCTGCTGTTGGTACTATGGTAGTTTTTCAGGGTGGGATAGGTCCAGCTGGGCATTCCACTGATGATCTCTATGTGCTTGACTTGAGCA CTGACAAATTCAAGTGGCACCGAGTGGTTGTACAGGGACAAGGGCCTGGGCCTCGTTATGGCCATGTAATGGACTTGGTTGCCCAAAGGTACCTTGTTAT TGTCAGTGGCAATGATGGTAAAAGAGCTCTATCTGATGCCTGGGTTTTGGACACTGCCCAGAAACCATATGCATGGCAGAGGCTAAATCCTGAAGGTGAT AGACCTTCTGCTCGAATGTATGCAACAGCTAGTGCCCGTTCAGATGGAATGTTTTTGCTTTGTGGTGGAAGAGACTCCTTTGGCACAGCACTTGGGGATG CTTATGGGCTTCTAATGCATAGAAATGGTCAGTGGGAGTGGACCCTTGCGCCTGGGGTGTCTCCATCAACAAGGTATCAACATGCTGCGGTTTTTGTTGG TGCACGTTTGCATGTTACAGGAGGAGCCCTAAAGGGAGGACGCTTAGTAGAAGGGGAAGCAGCTGTTGCTGTGCTGGACACTGCTGCGGGCGTTTGGTTG GATAGAAATGGGATAGTTACCTCTTCTAAAACCAGCAAGGGACATGCTGAATATGATCCTTCTTTGGAGCTAATGCGTCGTTGTCGCCATGCATCTGCAT CTGTTGGTGTTCGTATATATGTCTACGGTGGTCTAAAAGGAGATGCAGTGCTAGATGATTTTCTGGTTGCTGAAAATTCCCCATTCCAGTCAGACATGAA TTCTCCCATTTTAACATCTGAGAGAGCCTCAACAATAACAAGTCCCCGATCAAACCATTATAATTTAAATTCTTTTGGAACAACTACCCCTGATGGTGGA TCAGAGATCCCTTTATCTGGTGGTATCAGCATGGACAAAAATTCTATGGAGAAATTAAGGGAGGCATCTGCTGCGGAAGCTGAGGCAGCTAATGCTGTCT GGCAAGCTGCTCAGGCAGCATCTTCCAATCCTGCAGAAGAAACATCTGTATCTGATGACAATTCACAAGTGGCAGAAGCAACTTCAGATGGAAGTGACAA TGAGGCTGATGTTCGCCTTCATCCTAGAGCTGTGGTGGTTGCTAAAGAGGCTGTGGGAAACCTGGGTGGGTTGGTAAGGCAATTGTCATTGGATCAATTC GAAAATGAAAGTAGAAGGATGCTTCCTATGAATAATGATGCATCTTATCCTGCCAGAAAGTTCACCAGAAAAAAGTCTCCTCAAGGCCTGCATAAGAAGA TTATTTCCATGTTGCTTAGGCCTCGAAACTGGAAAGCTCCTGCAAATAGGAGATTTTTCCTGGATTCTTATGAAGTTGGGGAACTTTGTTATGCTGCTGA ACAAATATTTATGCAAGAGCCAACGGTTCTGCAATTGAAAGCCCCAATAAAAGTCTTTGGTGATCTTCATGGACAGTTTGGTGACTTAATGCGTCTATTT GATGAATATGGATTTCCATCGACAGCAGGAGACATTACGTACATCGACTATTTGTTTCTGGGAGACTATGTTGATCGAGGGCAGCACAGTTTGGAGACCA TAACTTTGCTTCTTGCTCTTAAGATTGAGAATCCCGAGAATGTCCACCTGATACGTGGTAACCATGAAGCTGCTGATATAAATGCGCTCTTTGGTTTTCG TATTGAATGCATTGAAAGAATGGGAGAGAGTGATGGAATATGGGCATGGACACGTTTCAATCAACTTTTCAACTGTCTTCCACTCGCTGCGCTTATTGAG AAGAAAATTATCTGTATGCATGGTGGCATAGGAAGATCCATTCATTCAGTGGAACAGATAGAGAAGCTGGAGAGGCCCATAACAATGGATGCTGGATCTA TAATTCTAATGGATCTTCTATGGTCGGATCCTACCGAAAATGATAGCATAGAGGGTTTGAGACCAAATGCTAGGGGTCCTGGTCTTGTCACTTTTGGGCC TGATCGTGTATCCGACTTCTGTAAGAAAAATAAGTTACAGCTGATTATTAGGGCGCATGAATGTGTCATGGATGGGTTTGAACGGTTTGCCCAAGGGCAA TTGATTACTCTATTTTCTGCAACCAACTATTGTGGGACTGCAAACAATGCTGGAGCTATACTGGTGGTTGGCAGGGGTTTGGTTGTGGTTCCAAAATTAA TTCATCCCTTGCCACCTCCCCTTCAATCACCAGAGACGTCTCCGGAACGTGTCATTGATGATGCATGGATGCAGGAGCTTAACATCCAAAGACCACCAAC TCCAACACGTGGTCGCCCTCAACCTGACCTTGACAGAAACTCACTTGCGTACATATGA
AA sequence Show only first row Show all	>Potri.002G213300.2 pacid=42776730 polypeptide=Potri.002G213300.2.p locus=Potri.002G213300 ID=Potri.002G213300.2.v4.1 annot-version=v4.1 MGSKPWLHPAPAYRALETYWSSDDDAPGPRCSHTLTAVAATKSHGPRLILFGGVTAIEGGASSAPGIRLDGATNSVHSYDVLTRKWTRIQAAGEPPSPRA AHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLSTDKFKWHRVVVQGQGPGPRYGHVMDLVAQRYLVIVSGNDGKRALSDAWVLDTAQKPYAWQRLNPEGD RPSARMYATASARSDGMFLLCGGRDSFGTALGDAYGLLMHRNGQWEWTLAPGVSPSTRYQHAAVFVGARLHVTGGALKGGRLVEGEAAVAVLDTAAGVWL DRNGIVTSSKTSKGHAEYDPSLELMRRCRHASASVGVRIYVYGGLKGDAVLDDFLVAENSPFQSDMNSPILTSERASTITSPRSNHYNLNSFGTTTPDGG SEIPLSGGISMDKNSMEKLREASAAEAEAANAVWQAAQAASSNPAEETSVSDDNSQVAEATSDGSDNEADVRLHPRAVVVAKEAVGNLGGLVRQLSLDQF ENESRRMLPMNNDASYPARKFTRKKSPQGLHKKIISMLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLKAPIKVFGDLHGQFGDLMRLF DEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIENPENVHLIRGNHEAADINALFGFRIECIERMGESDGIWAWTRFNQLFNCLPLAALIE KKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKKNKLQLIIRAHECVMDGFERFAQGQ LITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPERVIDDAWMQELNIQRPPTPTRGRPQPDLDRNSLAYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Potri.002G213300 [exp]	0	1	Pt-PP1.5
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.005G048900 [exp]	3.46	0.7829	XRN4.1
AT1G43860			sequence-specific DNA binding ...		Potri.005G186700 [exp]	4.47	0.7318
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.005G152500 [exp]	7.07	0.7304
AT5G10630			Translation elongation factor ...		Potri.006G275500 [exp]	7.34	0.7406
AT1G12930			ARM repeat superfamily protein...		Potri.014G141100 [exp]	8.24	0.7452
AT4G04980			unknown protein		Potri.004G038400 [exp]	18.33	0.7121
AT1G58025			DNA-binding bromodomain-contai...		Potri.004G223700 [exp]	21.35	0.7025
AT4G16700		PSD1	phosphatidylserine decarboxyla...		Potri.003G078300 [exp]	22.22	0.7088
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.001G159400 [exp]	23.02	0.7181
AT1G76460			RNA-binding (RRM/RBD/RNP motif...		Potri.005G256700 [exp]	23.87	0.6913

Compare expression of checked genes

Potri.002G213300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.