Plant FIBer expression Database

Potri.002G213400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03090 638 / 0 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G135700
[exp]
1494 / 0 AT4G03090 692 / 0.0 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006938
[exp]
665 / 0 AT4G03090 450 / 6e-148 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Lus10024746
[exp]
420 / 2e-137 AT4G03090 281 / 4e-85 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Lus10024745
[exp]
402 / 2e-130 AT4G03090 290 / 2e-88 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Lus10006937
[exp]
251 / 1e-74 AT4G03090 173 / 3e-47 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
PFAM info
Representative CDS sequence
>Potri.002G213400.3 pacid=42777059 polypeptide=Potri.002G213400.3.p locus=Potri.002G213400 ID=Potri.002G213400.3.v4.1 annot-version=v4.1
ATGCTATCTGCTACCAAAAATGTGGGAATTATAGTCTATGTTGGAAACTGTGGGCTTTCTTGTCCTGGCTCTTGCATGCAGGTTGCTGAGGAAGAACCAT
CTATGGCTGAACAAGTCATTGATTTAATTTCAGCAGTGAAAGAGTTACATGGTCTTAGCTGTCAGGAGCTTAACAAATTGTTAAGGGACTCTGAAAATTT
TACAATTCACTTTCATTCTGAAAAAGGATCTACAATAAAGATTGATGTGGAAAAACTGGCAGGCTTTCTTCCTTTACACCTTATTGCAGTACTTATGTCA
TCTGATAGAGATGAATCACTGTTGAGATATTTGTTGTGTGGTATTCGGCTTTTGCATTCCTTATGTGATCTAGCACCTCGGAACAGTAAACTTGAGCAGG
TTTTGCTCGATGATGTTAAAGTATCAGAGCAGCTGCTGGATCTGGTGTTTTATTTACTAATTGTTCTTAGTGGTTATAGACAGGAAAACTGTATTTCATG
TTCTCTGTTACTTGTGCATTCAGCACTGGTAGCATCCAGTCTACATTTATTGTCAGGATGTATATCTTTGCAATGGCAAGATCTTGTTCAAGTATTGCTT
GCTCACCCCAAGGTTGACATATTTATGGATGCAGCTTTTGGAGCTGTTCATGTAGCCATTAGATTTCTTCAGGTCAAGCTGTCAGATCAATATACTGGTC
TTCATGCGAAAAGTCCAACAGCTGAACAAATAGTTAACTATATCTGCCAACAATGTGAGGCTTCTTTACAGATTCTTCAGTCATTGTGCCAGCAAAAGGT
GTTTCGCGAGCGCCTTCTTAGGAACAAGGAACTTTGTGGAAGGGGAGGTGTTCTTTTTCTGGCGCGGGCCATCTTGAATTTAAACGTTACACCTCCTTTT
GTAGATTCTTTCACTGTTGTAGCTGCAATATCTAGACTGAAGGCTAAAGTATTATCGATTCTATTGCATTTGTGTGAAGCAGAAAGCATCTCTTACCTTG
ATGAGGTAGCGAGTTCTCCAGGGAGTCTTGATTTGGCAAAGTCTGTAGTATTAGAGATTCTTGAATTACTGAAGGCTGCACTTAGCAAAGATCCCAATCA
TCTTAGTCCATGTTCAGACAGAACTTTTCCCATGGGGCTTTTGCGACTCAATGCTATGCGTCTGGCTGATATCTTCTCAGATGATTCAAATTTCAGATCT
TTTATCACAACTTGCTTTACCAAAGTTATGACCGCTATTTTTTCGCTCCCCCATGGAGATTTTTTATCAATCTGGTGTTCGTCTGAATTTCCACCAAGAG
AAGAAGATGCTACTCTGGAGTATGACACATTTGCAGCAGCTGGGTGGTTTTTAGACACATTTGCAGCAGCGAACCTGTCAAATGCAATAAATTTAGAAAT
TACTTTAATTCCCAGTAACATGCCTCAAGCTATGTATGCGCATCAGAGAACTTCATTATTTGTGAAACTAATTGCCAACCTACACTGTTTTGTTCCAAAC
ATTTGTGAAGAACAGGAAAGAAACTTGTTCCTTCACAAGTTTTTGGAGTGCATGAGGATGGACCCATCTAAATCACTGCCTGGGTTTTCTTTTACTTCTG
GTGCTCAAAGAGCTGTAACAGTTTGCAGGAACCTTCGTTCATTGCTAAGTCATGCAGAGTCTTTAATTCCAAACTTTTTGAATGAGGAGGATGTACAGCT
CTTAAGAGTGTTCTTTAACCAGTTACAATCATTGATTAATCCTGCTGATTTTGAAGAAAACCAAGTTCAAGAAATCAAATCAGAGAGGTCAATATCTTTG
GATAAGTTCTCCAGACTCAGTATTGATGAGCATCTTCAGGAAGCTCAAAGCACTAGGGCATCCTCATCACCTATGGCGAGGAAGGAACCTTCAAGTCTTA
ACAACAGGACAGATATTCAAAAGGAGGAAATGTCAGAGAATTCAGCTATTCAAGAAGAGGAGAAGCACAATTTCAGAAATGAGCATATGAATCAAGCTAA
TGTGATGAGGGGAGACAAAGCTAAATCTGGTGCATGCGCTTCTGATGTTTTAAGAGAGATGGATAGAGATTCTCATAATGTTGAGACAAGTGGTTCAGAT
ACAAGTTCAACTAGAGGAAAGACTTTTGTAGGTCAAGTGGTGAATGGTGACTTACTGAAATCAAGTGCACATATAAAAGGAAGTGGCTGCCAGGGAGTTC
GAAATGGTGAAAAAGCTGAAAGTCTTCATTTTGAAGAAAAGCAGCCAAGAAAAAGGAAGCGAACTATTATGAATGACTATCAAATCGCACTTATGGAGAA
AGCCCTGCTAGATGAACCTGAGATGCAGCGAAATGCAGCAGCGTTACAGTCATGGGCTGATAAATTAAGTCTCAATGGATCAGAAGTTACATCTTCACAG
CTGAAAAATTGGCTCAACAATCGTAAAGCAAGGTTAGCTCGTGCAGGTAAGGATGTTCGTGCACCAATGGAAGTTGATATTACATTTCCAGAAAATCAAG
TTGGACAAGCATTGCAGCACGAGTCACCTGAGAGCCCAGGTGAAGATAACATCACATCAAGTGTAAGAGGCCTTCAAAACACATCAGAAATTGGTGTGTA
TGAAGATCCCGAGGCTGGTATAGGATTGTCAGACTTTGTTGACATTGGTGCTTCATAA
AA sequence
>Potri.002G213400.3 pacid=42777059 polypeptide=Potri.002G213400.3.p locus=Potri.002G213400 ID=Potri.002G213400.3.v4.1 annot-version=v4.1
MLSATKNVGIIVYVGNCGLSCPGSCMQVAEEEPSMAEQVIDLISAVKELHGLSCQELNKLLRDSENFTIHFHSEKGSTIKIDVEKLAGFLPLHLIAVLMS
SDRDESLLRYLLCGIRLLHSLCDLAPRNSKLEQVLLDDVKVSEQLLDLVFYLLIVLSGYRQENCISCSLLLVHSALVASSLHLLSGCISLQWQDLVQVLL
AHPKVDIFMDAAFGAVHVAIRFLQVKLSDQYTGLHAKSPTAEQIVNYICQQCEASLQILQSLCQQKVFRERLLRNKELCGRGGVLFLARAILNLNVTPPF
VDSFTVVAAISRLKAKVLSILLHLCEAESISYLDEVASSPGSLDLAKSVVLEILELLKAALSKDPNHLSPCSDRTFPMGLLRLNAMRLADIFSDDSNFRS
FITTCFTKVMTAIFSLPHGDFLSIWCSSEFPPREEDATLEYDTFAAAGWFLDTFAAANLSNAINLEITLIPSNMPQAMYAHQRTSLFVKLIANLHCFVPN
ICEEQERNLFLHKFLECMRMDPSKSLPGFSFTSGAQRAVTVCRNLRSLLSHAESLIPNFLNEEDVQLLRVFFNQLQSLINPADFEENQVQEIKSERSISL
DKFSRLSIDEHLQEAQSTRASSSPMARKEPSSLNNRTDIQKEEMSENSAIQEEEKHNFRNEHMNQANVMRGDKAKSGACASDVLREMDRDSHNVETSGSD
TSSTRGKTFVGQVVNGDLLKSSAHIKGSGCQGVRNGEKAESLHFEEKQPRKRKRTIMNDYQIALMEKALLDEPEMQRNAAALQSWADKLSLNGSEVTSSQ
LKNWLNNRKARLARAGKDVRAPMEVDITFPENQVGQALQHESPESPGEDNITSSVRGLQNTSEIGVYEDPEAGIGLSDFVDIGAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G03090 sequence-specific DNA binding;... Potri.002G213400
[exp]
0 1
AT1G31480 SGR2 shoot gravitropism 2 (SGR2) (.... Potri.013G099700
[exp]
1.00 0.9027 SGR2.1
AT1G08620 PKDM7D Transcription factor jumonji (... Potri.002G037300
[exp]
2.00 0.8773
AT1G70650 Ran BP2/NZF zinc finger-like s... Potri.010G107400
[exp]
3.74 0.8294
AT1G77250 RING/FYVE/PHD-type zinc finger... Potri.005G183700
[exp]
5.65 0.7918
AT5G08110 nucleic acid binding;ATP-depen... Potri.012G063500
[exp]
7.21 0.8132
AT5G38640 NagB/RpiA/CoA transferase-like... Potri.017G111800
[exp]
9.00 0.7943
AT3G17450 hAT dimerisation domain-contai... Potri.002G188400
[exp]
11.22 0.8278
AT1G45616 AtRLP6 receptor like protein 6 (.1) Potri.012G024900
[exp]
12.36 0.8578
AT1G05270 TraB family protein (.1) Potri.007G121800
[exp]
13.03 0.8218
AT4G11970 YTH family protein (.1.2.3) Potri.001G113500
[exp]
13.26 0.7994

Potri.002G213400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.