Plant FIBer expression Database

Potri.002G213600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47970 596 / 0 Nuclear pore localisation protein NPL4 (.1.2)
AT3G63000 595 / 0 NPL41 NPL4-like protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G135590
[exp]
688 / 0 AT3G63000 609 / 0.0 NPL4-like protein 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017163
[exp]
652 / 0 AT3G63000 670 / 0.0 NPL4-like protein 1 (.1)
Lus10021567
[exp]
645 / 0 AT3G63000 666 / 0.0 NPL4-like protein 1 (.1)
Lus10027618
[exp]
290 / 7e-98 AT2G47970 289 / 1e-98 Nuclear pore localisation protein NPL4 (.1.2)
Lus10027617
[exp]
176 / 4e-48 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0366 JAB PF05021 NPL4 NPL4 family
CL0072 Ubiquitin PF11543 UN_NPL4 Nuclear pore localisation protein NPL4
Representative CDS sequence
>Potri.002G213600.1 pacid=42778872 polypeptide=Potri.002G213600.1.p locus=Potri.002G213600 ID=Potri.002G213600.1.v4.1 annot-version=v4.1
ATGGTGATGGTTCGAATCCGCAGCAGAGACGGGCTGGAACGCGTCTCCATCGACAACACAAACATCACAGTTTCCCAACTCAAAACTCTAATCCAAAACC
AACTCCAAATCCCTATCCGCAGCCAAACCCTCTCTACCAACCAAAGCCTCCTCTTAGCCAAATCACCCTCCGATCTCCTCAAATTCACTGACATGTCCAA
CCCTGACACTCCTCTCTCTTCCCTCAGCATCTCTCACGGCTCCCTTATCTTCTTAGCCTACGATGGCGAGAGAACTATTGCCGGCCCCGCTGTTCGACCT
GCTGGTTCTTTCGGCCGGAAGATGACAATCGACGATCTTATTGCCAAACAGATGAGAGTCACCAGGCAAGAAAATCCCCACTGCGATTCTGTCTCGTTTG
ATCGCGATTGCGCTAATGCGTTTCAGCATTATGTTAATGAAACGCTCGCTTTTGCTGTTAAAAGAGGTGGGTTTATGTACGGCACGGTGTCGGAGGAGGG
GAAGGTTGAAGTCGATTTCATATACGAGCCACCGCAGCAGGGGACTGAAGAGGTTCTGATGCTCTTGAGAGATTCCGATGAAGAAAAATTAGTGGAGGCG
ATTACGGCGTGTTTGGGAATGAGGAGAGTGGGGTTTATTTTTACGCAGACTATAATGCAGGACAAAAAGGACTATACGTTGTCGCATAGGGAAGTTCTTC
AGGCGGCGGAGCTGCATGCTGAGAGTGAATTGAAAGAGTGGGTTACTGCGGTGGTGAAGTTGGAGGTAAGTGAGGATGGGGGAGCCGATGTGCATTTCGA
GGCGTTTCAGATGAGTGATATGTGTATTAGGCTGTTTAAAGAAGGATGGTTTGAGACGGAGATTGGGGAAGATGCCGATCCTAAGTTGTCTAAAATGAAG
AAAGATGTGGTTGTTGGTACCAAGGATGTTAAGGAGGTCGATAATGATTTTTTCTTGGTCGTTGTCAAGATTTTAGATCACCTGGGCCCTCTTTCATCAA
CCTTCCCCATTGAGAACAGGATCACACAAGTGACAATGAGAGCATTGAGGAGTCATCTGGACCGTGCAAAGAATCTTCCATTTGTGAAGAGAATTTCTGA
TTTTCATCTCTTGCTATTTCTGGCCAAGTATCTGGACCTCAATTCTGATGTTCCGGCATTAGCAGAGTGTGTGCTTGCACAGACAGCAGTACCAGAGGGT
TATCAGATCCTAATTGAGTCCATGGCTACTACTTGA
AA sequence
>Potri.002G213600.1 pacid=42778872 polypeptide=Potri.002G213600.1.p locus=Potri.002G213600 ID=Potri.002G213600.1.v4.1 annot-version=v4.1
MVMVRIRSRDGLERVSIDNTNITVSQLKTLIQNQLQIPIRSQTLSTNQSLLLAKSPSDLLKFTDMSNPDTPLSSLSISHGSLIFLAYDGERTIAGPAVRP
AGSFGRKMTIDDLIAKQMRVTRQENPHCDSVSFDRDCANAFQHYVNETLAFAVKRGGFMYGTVSEEGKVEVDFIYEPPQQGTEEVLMLLRDSDEEKLVEA
ITACLGMRRVGFIFTQTIMQDKKDYTLSHREVLQAAELHAESELKEWVTAVVKLEVSEDGGADVHFEAFQMSDMCIRLFKEGWFETEIGEDADPKLSKMK
KDVVVGTKDVKEVDNDFFLVVVKILDHLGPLSSTFPIENRITQVTMRALRSHLDRAKNLPFVKRISDFHLLLFLAKYLDLNSDVPALAECVLAQTAVPEG
YQILIESMATT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G63000 NPL41 NPL4-like protein 1 (.1) Potri.002G213600
[exp]
0 1
AT5G40490 RNA-binding (RRM/RBD/RNP motif... Potri.001G344900
[exp]
2.44 0.8066
AT4G10810 unknown protein Potri.002G173700
[exp]
6.40 0.8235
AT1G08970 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9"... Potri.013G025000
[exp]
20.39 0.8087 Pt-HAP5.3
AT3G12400 ELC, ATELC Ubiquitin-conjugating enzyme/R... Potri.003G191100
[exp]
22.62 0.7993
AT3G61140 EMB78, CSN1, CO... EMBRYO DEFECTIVE 78, COP9 SIGN... Potri.002G154500
[exp]
26.07 0.7172 EMB78.2
AT4G17960 unknown protein Potri.001G143600
[exp]
29.06 0.7565
AT3G13200 EMB2769 EMBRYO DEFECTIVE 2769, Cwf15 /... Potri.001G370366
[exp]
30.06 0.7727
AT4G39910 ATUBP3 ubiquitin-specific protease 3 ... Potri.007G093600
[exp]
33.04 0.7078 Pt-UBP3.1
AT2G44200 CBF1-interacting co-repressor ... Potri.006G000200
[exp]
37.28 0.7897
AT3G54540 ABCF4, ATGCN4 ATP-binding cassette F4, gener... Potri.008G003300
[exp]
39.33 0.7749 GCN4.3

Potri.002G213600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.