Plant FIBer expression Database

Potri.002G213900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G135560
[exp]
120 / 7e-36 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G213900.2 pacid=42779953 polypeptide=Potri.002G213900.2.p locus=Potri.002G213900 ID=Potri.002G213900.2.v4.1 annot-version=v4.1
ATGGAGAGAATGAAGAAATCTGTTGATGTTTCTTCTTTCTTGCTAGTGGAAGCTACAGGTGATTCTGAGGTTGATTCTGATCCCAACATGACCATCATAG
ATCTTGTTGATGATGATGACGGTGATGCAGAGTCATGTAGCTGTGATACATCATACCATTCTTGTGTTAATGGTGTCTACAGTGAGGTTGAAGAATATCA
TGTTAATTATAATGTGGTTGATGAAGAGCAGCATCAGCATCAGCATCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGGAGAAG
GGAGTTCATGTTTATCAATCACGGGTTGATCATGGACATGCTGGGTTACCAGTGAAGCAAAAATCATGTGTTTCAGTGGATTCAGCCAACGAATCAATGA
ATGAGAAGGAGGAGAACAGGTTGTTTTGGGAGGCTTGCTTGGCTTCGTAA
AA sequence
>Potri.002G213900.2 pacid=42779953 polypeptide=Potri.002G213900.2.p locus=Potri.002G213900 ID=Potri.002G213900.2.v4.1 annot-version=v4.1
MERMKKSVDVSSFLLVEATGDSEVDSDPNMTIIDLVDDDDGDAESCSCDTSYHSCVNGVYSEVEEYHVNYNVVDEEQHQHQHQQQEEEEEEEEEEQQQEK
GVHVYQSRVDHGHAGLPVKQKSCVSVDSANESMNEKEENRLFWEACLAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G213900
[exp]
0 1
Potri.017G050200
[exp]
19.74 0.6557
AT3G21690 MATE efflux family protein (.1... Potri.011G002800
[exp]
34.08 0.6165
AT5G55560 Protein kinase superfamily pro... Potri.014G164100
[exp]
37.06 0.6397
AT1G29150 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE... Potri.008G042400
[exp]
45.82 0.6032 ATS9.3
AT5G09960 unknown protein Potri.005G084700
[exp]
46.95 0.5772
AT2G38710 AMMECR1 family (.1.2) Potri.010G240000
[exp]
50.40 0.5909
AT5G59970 Histone superfamily protein (.... Potri.010G214000
[exp]
53.32 0.5639
AT4G31180 Class II aminoacyl-tRNA and bi... Potri.006G085400
[exp]
62.56 0.5879
AT3G01130 unknown protein Potri.004G164066
[exp]
70.69 0.6148
AT4G36760 ATAPP1 ARABIDOPSIS THALIANA AMINOPEPT... Potri.007G030050
[exp]
70.82 0.5465

Potri.002G213900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.