Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03110 506 / 3e-179 AtRBP-DR1 RNA-binding protein-defense related 1 (.1.2) AT1G03457 475 / 4e-167 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G16280 171 / 8e-48 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT2G47310 106 / 8e-25 flowering time control protein-related / FCA gamma-related (.1) AT3G07810 69 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 68 / 3e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 68 / 4e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G18510 67 / 7e-12 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 67 / 7e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 66 / 1e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135540 [exp] 687 / 0 AT4G03110 513 / 0.0 RNA-binding protein-defense related 1 (.1.2) Potri.010G147900 [exp] 164 / 3e-44 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.002G192900 [exp] 137 / 1e-35 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1) Potri.017G059000 [exp] 72 / 4e-15 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319900 [exp] 69 / 5e-14 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.002G222400 [exp] 70 / 8e-13 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.007G028300 [exp] 68 / 2e-12 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G015700 [exp] 69 / 3e-12 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 68 / 3e-12 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005926 [exp] 591 / 0 AT4G03110 548 / 0.0 RNA-binding protein-defense related 1 (.1.2) Lus10040910 [exp] 357 / 2e-121 AT4G03110 326 / 5e-109 RNA-binding protein-defense related 1 (.1.2) Lus10029574 [exp] 171 / 1e-46 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 145 / 1e-37 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10017070 [exp] 140 / 4e-36 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4) Lus10006304 [exp] 104 / 1e-24 AT4G16280 322 / 7e-106 RNA binding;abscisic acid binding (.1.2.3.4) Lus10012348 [exp] 72 / 2e-13 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 69 / 2e-12 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 68 / 2e-12 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10010042 [exp] 69 / 3e-12 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.002G214000.1 pacid=42778542 polypeptide=Potri.002G214000.1.p locus=Potri.002G214000 ID=Potri.002G214000.1.v4.1 annot-version=v4.1 ATGGCGGAGGGTGAAAAGGAGAAGAAATCAAGCAGCAGCAATAATGAGGAGAGCGTGAAGCTATTTGTAGGTCAAGTACCAAAGCACATGACAGAAGATG AGGTTCTGGCAATGTTCAAAGAGTTCGCTTTGGTGGACGAAGTCAACATCATTAAAGACAAGACCACTCGCGCTTCCCGAGGTTGTTGTTTTCTAATATG TCCTTCCAGACAAGAAGCAGATAAGGCTGTTAATGCTTGTCATAATAAGAAAACGTTGCCCGGGGCATCTAGTCCTTTGCAAGTGAAGTATGCAGATGGA GAGCTGGAAAGGCTAGAACACAAACTATTTGTTGGTATGCTTCCAAAAAATGTTTCTGAAGCTGAATTGTCCGATTTATTCTCTAAATATGGAATTATAA AGGACTTACAAATACTAAGAGGTTCTCAACAAACAAGCAAAGGCTGTGCTTTTTTGAAGTATGAGACAAAAGAACAAGCCCATGCTGCCCTGGAGGACAT CAATGGAAAACATAAAATGGAGGGTTCAAGTGTTCCTTTGGTTGTCAAATGGGCAGATACAGAAAAGGAAAGGCAGGCTCGGAGGGCCCAGAAAGCACAA TCTCAAGCTATGCCCAATACTGATTCACAACATCCATCATTATTTGGTGCCTTGCCAATGGGATATGCTCCCCCTTATAATGGATATGGATACCAGGCTC CTGGAGCTTATGAACTTGTGCCATACCGTCTGCGTGGTGGGATCAGACCTGACCTTTCACTCAATATTTCCCCTAGAAATTATGCTCCTGCTGGTTATAT GGGCTCTGCTTATCCTACGATGCCAGGTCTTCAGTATCCAATTGCATATCCTGGAGCAATAATGAGTCACCGACCTTTGAGTAACTCTCCTGGTACATTA TCACCCACAGTTCCGAGCTGTAATTCTGCAACATCTTCAGGTGCCAGTGGAAGTTCTGGGGGTCAAGTGGAAGGTCCACCTGGTGCTAATTTATTCATAT ATCATATACCTCAAGAATTCGGTGACCAAGAGCTTGCCAATACTTTTCAAGCATTTGGTCAGGTCTTAAGTGCCAAGGTCTTTGTTGATAAAGCAACTTG TGTTAGCAAATGTTTCGGATTTGTGAGTTATGACTCACCAGCTGCAGCTCAAAATGCCATTACCATGATGAATGGATGCCAATTGGGTGGTAAGATGTTG AAGGTTCAGCTTAAGAAAGACAATAAACAGAGCAAACCTTATTGA
AA sequence Show only first row Show all	>Potri.002G214000.1 pacid=42778542 polypeptide=Potri.002G214000.1.p locus=Potri.002G214000 ID=Potri.002G214000.1.v4.1 annot-version=v4.1 MAEGEKEKKSSSSNNEESVKLFVGQVPKHMTEDEVLAMFKEFALVDEVNIIKDKTTRASRGCCFLICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG ELERLEHKLFVGMLPKNVSEAELSDLFSKYGIIKDLQILRGSQQTSKGCAFLKYETKEQAHAALEDINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQ SQAMPNTDSQHPSLFGALPMGYAPPYNGYGYQAPGAYELVPYRLRGGIRPDLSLNISPRNYAPAGYMGSAYPTMPGLQYPIAYPGAIMSHRPLSNSPGTL SPTVPSCNSATSSGASGSSGGQVEGPPGANLFIYHIPQEFGDQELANTFQAFGQVLSAKVFVDKATCVSKCFGFVSYDSPAAAQNAITMMNGCQLGGKML KVQLKKDNKQSKPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.002G214000 [exp]	0	1
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	4.24	0.7939
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.004G054900 [exp]	5.29	0.7875
AT1G10850			Leucine-rich repeat protein ki...		Potri.010G097200 [exp]	9.48	0.7832
AT1G09010			glycoside hydrolase family 2 p...		Potri.013G021200 [exp]	10.90	0.7609
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.005G124000 [exp]	12.24	0.8010
AT5G14210			Leucine-rich repeat protein ki...		Potri.015G093100 [exp]	14.00	0.7830
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.006G247200 [exp]	15.32	0.7872
AT4G30400			RING/U-box superfamily protein...		Potri.018G098500 [exp]	16.21	0.8060
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077700 [exp]	16.43	0.7627
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	17.23	0.7807

Compare expression of checked genes

Potri.002G214000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.