Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53310 1699 / 0 ATPEPC1, ATPPC1 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) AT2G42600 1694 / 0 ATPPC2 phosphoenolpyruvate carboxylase 2 (.1.2) AT3G14940 1686 / 0 ATPPC3 phosphoenolpyruvate carboxylase 3 (.1) AT1G68750 513 / 4e-166 ATPPC4 phosphoenolpyruvate carboxylase 4 (.1) AT3G42628 83 / 1e-19 phosphoenolpyruvate carboxylase-related / PEP carboxylase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G391900 [exp] 1750 / 0 AT3G14940 1776 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.011G110700 [exp] 1747 / 0 AT3G14940 1766 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.008G114200 [exp] 509 / 4e-164 AT1G68750 1514 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Potri.010G131800 [exp] 505 / 9e-163 AT1G68750 1536 / 0.0 phosphoenolpyruvate carboxylase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033610 [exp] 1739 / 0 AT1G53310 1722 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10017653 [exp] 1736 / 0 AT1G53310 1725 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10029837 [exp] 1731 / 0 AT2G42600 1719 / 0.0 phosphoenolpyruvate carboxylase 2 (.1.2) Lus10020701 [exp] 1730 / 0 AT1G53310 1714 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10035050 [exp] 530 / 4e-172 AT1G68750 1560 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10017886 [exp] 526 / 5e-171 AT1G68750 1566 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10000065 [exp] 359 / 3e-118 AT3G14940 364 / 9e-121 phosphoenolpyruvate carboxylase 3 (.1) Lus10017651 [exp] 284 / 3e-90 AT1G53310 273 / 8e-87 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF00311 [poplar] [flax] PEPcase Phosphoenolpyruvate carboxylase
Representative CDS sequence Show only first row Show all	>Potri.002G214100.1 pacid=42777091 polypeptide=Potri.002G214100.1.p locus=Potri.002G214100 ID=Potri.002G214100.1.v4.1 annot-version=v4.1 ATGGCAGATAGGAATTTGCAGAAGATGGCATCGATAGATGCACAGTTGAGGCTGTTGGCACCAGGGAAGGTCTCTGAGGATGACAAGTTGGTGGAGTATG ATGCTTTGTTATTGGACCGGTTTCTTGATATATTGCAGGATTTGCATGGCAAGGATATCAGAGAAACGGTTCATGACTGTTACGAGCTTTCAGCAGAGTA CGAGGCAAAGCATGACCCTCAGAAGTTGGAGGAACTTGGGAGAGTGATTACGAGTTTGGATCCTGGGGACTCGATTGTTGTTACAAAATCATTCTCTCAC ATGCTTAATCTGGCAAACTTGGCTGAGGAGGTTCAGATTGCTTCTAGACGAAGGATTAAGTTAAAGAAGGGAGATTTTGCTGATGAGAATTCGGCAACAA CTGAATCAGATATTGAGGAGACACTCAATAGACTTGTGGGGCAGTTGAACAAGTCGCCAGAGGAAGTTTTTGAAGCTTTGAAGAATCAGACTGTGGATTT GGTCCTAACTGCACATCCTACTCAATCTGTCCGTAGATCCTTGCTTCAAAAGCATGCAAGGATACGGAATTGTCTGACTCAGTTGTATGCCAAGGACATT ACTCCATATGATAAGCAGGAACTTGATGAGGCTTTACAAAGAGAGATCCAAGCTGCATTTCGCACTGATGAGATCCGAAGGACTCCTCCAACTCCACAAG ATGAAATGAGGGCGGGAATGAGCTACTTCCATGAGACAATTTGGAAGGGTGTTCCGAAGTTCCTGCGGAGGCTTGACACAGCTTTGAAGAACATTGGAAT AAAAGAACGCGTTCCTTATAATGCCCCCGTCATCCAGTTCTCTTCCTGGATGGGTGGGGATCGTGACGGAAATCCACGTGTAACTCCTGAAGTTACACGA GATGTTTGCTTACTAGCTAGGATGATGGCTGCTAATCTCTATTTCTCCCAGATAGAGGATCTTATGTTTGAGTTGTCTATGTGGCGCTGCAATGAAGAAC TTCGTGTTCGCGCAGATGAACTTCATTCATCTTCAAAAAGATATGCGAAACACTACATAGAATTTTGGAAACAGATCCCTCCAAATGAGCCATATCGTGT TGTTCTTGGAAATGTAAGGGACAAGCTGTACAACACCCGCGAACGCTCTCGTCAGTTACTAGCCAATGGGAAATCTGACATTCCTGAGGATTCAACTTTC ACTAATGCTGAGCAGATCCTCGAGCCTCTTGAACTCTGCTACAGATCACTTTGTGCGTGTGGTGATCGACCAATTGCAGACGGAAGCCTTCTTGATTTCT TACGGCAAGTTTCTACCTTTGGACTCTCACTTGTCAGACTTGATATCCGGCAGGAATCTGACAGGCACACTGCTGTTCTGGATGCCATCACAAAGCACTT GGGCATTGGATCCTATCGAGAATGGTCTGAGGAGCATAGGAGGGAATGGCTCTTATCTGAGCTCCGTGGCAAACGTCCTCTTTTTGGACCTGATCTTCCC AAAACTGAAGAAATTGCTGATGTGCTGGACACGTTTCATGTCATTGCAGAACTTCCTCCGGACAACTTTGGTGCTTATATAATCTCAATGGCCACGAGCC CTTCTGATGTACTTGCCGTTGAACTGTTACAACGTGAATGTCATGTCCAACAATCACTTAGGGTTGTTCCATTGTTTGAAAAGCTGGCTGATCTTGAAGC CGCTCCTGCTGCTATGGCTTGTCTCTTCTCAATAAATTGGTATAGAGACCGGATCAAGGGGAAGCAAGAAGTCATGATAGGGTACTCAGATTCTGGAAAG GATGCTGGGCGTCTCTCTGCTGCTTGGCAGCTGTATAAGGCTCAAGAAGAGCTTGTGAAGGTGGCGAAGCAATATGGGGTTAAGCTAACCATGTTCCACG GCCGAGGAGGGACAGTTGGAAGAGGTGGAGGGCCTACCCATCTCGCTATATTATCTCAACCACCTGACACCATTCATGGATCACTTCGTGTGACTGTTCA AGGAGAAGTTATTGAAAAGTCCTTTGGTGAAGAGCACTTATGTTTCAGAACGCTCCAGCGTTTTACAGCTGCCACACTTGAGCATGGAATGCATCCTCCG GTCTCACCAAAATCAGAATGGCGTGCTCTCATGGATGAGATGGCAATTGTTGCGACAAAAGAATACCGATCCATAGTCTTCCAAGAACCTCGTTTTGTTG AATACTTCCGCCTTGCAACACCAGAGTTGGAGTATGGTCGGATGAACATTGGCAGTCGACCATCAAAACGGAAGCCAAGTGGCGGCATTGAATCACTCCG AGCAATCCCATGGATCTTTGCTTGGACCCAGACAAGGTTTCATCTACCAGTTTGGCTTGGCTTTGGAGCAGCATTTAAGCATGTGATTCAGAAGGATACA AAAAATCTCCACACGCTCCAGGAGATGTACAATCAGTGGCCTTTCTTCAGAGTCACAATTGACTTAGTTGAGATGGTTTTTGCCAAGGGAGGTCCAGGAA TCGCTGCTTTGTATGACAAGCTCCTAGTGTCAGAAGAACTGCGACCCTTCGGGGACCGCTTGAGAGCAAACTATGAAGAAAATAAGCTCTTCCTCCTCCA GATTGCCGGGCATAAAGACCTTCTTGAAGGAGACCCATACTTGAAGCAGAGGCTTCGTCTTCGCGATGCATATATCACAACCCTTAATGTTTGCCAAGCC TACACTTTGAAGCAAATTCGTGATCCTGACTACCATGTGACAGTAAGGCCACACTTGTCAAAAGATTACATGGAATCGACCAAACCGGCTGCAGAGCTTG TGAAGCTTAACCCTACAAGTGAGTACGCACCAGGCCTGGAAGACACCCTTATTTTAACCATGAAGGGCATCGCTGCTGGCCTGCAAAACACTGGTTAA
AA sequence Show only first row Show all	>Potri.002G214100.1 pacid=42777091 polypeptide=Potri.002G214100.1.p locus=Potri.002G214100 ID=Potri.002G214100.1.v4.1 annot-version=v4.1 MADRNLQKMASIDAQLRLLAPGKVSEDDKLVEYDALLLDRFLDILQDLHGKDIRETVHDCYELSAEYEAKHDPQKLEELGRVITSLDPGDSIVVTKSFSH MLNLANLAEEVQIASRRRIKLKKGDFADENSATTESDIEETLNRLVGQLNKSPEEVFEALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLTQLYAKDI TPYDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRLDTALKNIGIKERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTR DVCLLARMMAANLYFSQIEDLMFELSMWRCNEELRVRADELHSSSKRYAKHYIEFWKQIPPNEPYRVVLGNVRDKLYNTRERSRQLLANGKSDIPEDSTF TNAEQILEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTAVLDAITKHLGIGSYREWSEEHRREWLLSELRGKRPLFGPDLP KTEEIADVLDTFHVIAELPPDNFGAYIISMATSPSDVLAVELLQRECHVQQSLRVVPLFEKLADLEAAPAAMACLFSINWYRDRIKGKQEVMIGYSDSGK DAGRLSAAWQLYKAQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEKSFGEEHLCFRTLQRFTAATLEHGMHPP VSPKSEWRALMDEMAIVATKEYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDT KNLHTLQEMYNQWPFFRVTIDLVEMVFAKGGPGIAALYDKLLVSEELRPFGDRLRANYEENKLFLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQA YTLKQIRDPDYHVTVRPHLSKDYMESTKPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGLQNTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Potri.002G214100 [exp]	0	1
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Potri.005G086200 [exp]	25.23	0.8126	Pt-LIP1.1
AT5G35170			adenylate kinase family protei...		Potri.006G189201 [exp]	42.14	0.8178
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.001G215132 [exp]	42.90	0.8204
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.004G028000 [exp]	55.22	0.7935	ARK3.1
AT5G61520			Major facilitator superfamily ...		Potri.004G233700 [exp]	119.62	0.7782
AT5G43745			Protein of unknown function (D...		Potri.010G078600 [exp]	174.29	0.7619
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.006G043092 [exp]	180.32	0.7580
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072816 [exp]	226.60	0.7488

Compare expression of checked genes

Potri.002G214100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.