Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58640 1197 / 0 Mitogen activated protein kinase kinase kinase-related (.1.2) AT2G31010 1083 / 0 Protein kinase superfamily protein (.1.2) AT2G42640 698 / 0 Mitogen activated protein kinase kinase kinase-related (.1) AT1G73660 284 / 3e-82 protein tyrosine kinase family protein (.1) AT5G11850 276 / 3e-80 Protein kinase superfamily protein (.1) AT1G18160 275 / 4e-79 Protein kinase superfamily protein (.1) AT1G08720 267 / 1e-76 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G03730 264 / 5e-76 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT3G06620 249 / 4e-71 PAS domain-containing protein tyrosine kinase family protein (.1) AT5G49470 240 / 2e-70 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142700 [exp] 1478 / 0 AT3G58640 1174 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Potri.006G229400 [exp] 277 / 5e-80 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 275 / 2e-79 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 275 / 2e-79 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 276 / 5e-79 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.013G034800 [exp] 274 / 8e-79 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.012G048400 [exp] 275 / 1e-78 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.016G095750 [exp] 267 / 4e-77 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.006G115800 [exp] 258 / 5e-74 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029833 [exp] 1210 / 0 AT3G58640 1057 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10033608 [exp] 1201 / 0 AT3G58640 1057 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10017649 [exp] 1176 / 0 AT3G58640 1040 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10020708 [exp] 1134 / 0 AT3G58640 1020 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10031341 [exp] 272 / 7e-79 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 273 / 2e-78 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10023865 [exp] 270 / 5e-78 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 270 / 8e-78 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10004124 [exp] 266 / 1e-76 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 266 / 1e-76 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0125 [poplar] [flax] Peptidase_CA PF14381 [poplar] [flax] EDR1 Ethylene-responsive protein kinase Le-CTR1
Representative CDS sequence Show only first row Show all	>Potri.002G214400.1 pacid=42777606 polypeptide=Potri.002G214400.1.p locus=Potri.002G214400 ID=Potri.002G214400.1.v4.1 annot-version=v4.1 ATGGAGGAGACACGAGATGATTCAGGGCCAGTGGAGCAAGGGCCTTCAAATTCTGTGTGGTGGGGTTCAGACTTTATCGAGAAATTTGACTCTGTCTCTT TGCTTTCTCAAGAAGATACTTTGAGTAATAAAGAATCACCTAAAAGTTATGAGGAAGATGGTTTGTCTTCTCAGACTGCATCACAAATTCTCTGGAGCAC TGGGATGCTTTCCAAACAAATACCAAATGGTTTTTACTCTGTCATACCGGATAAAAGGCTAAAGGAGCTCTTTGTTAATATTCCAACTTTAGATGAGCTT CATTCTATGGGAGCCGAGGGTTTCAAGGCTGATGTCATTCTTGTAGATGCTAAGAAAGACAAAAAGCTATCCATGCTTAAGCAATTGATTGTGGCACTGG TAAAAGGGTTGAACTCAAATCCAGCTGCAATGATAAAAAAGATTGCTGGATTGGTTTCTGATTTTTATAAAAGACCAAATGTGGAGAGTCCAGCAAAAGC TGCACTAGAAGAAGCCTCCCACGTGTTAGAAAATCGAGGTGTTCAGTTGCTGGGGCAAATAAGGCAAGGGTCATGCTGTCCTAGGGCAATCTTGTTCAAA GTTTTAGCAGATTCTGTAGGTCTTGAAAGTAGACTCATGGTGGGTTTACCAAATGATGGGACTGTTGAGTGTGTGGACTCATATAAACACATGTCTGTGA TTGTTGTGTTGAATTCTGTGGAACTACTGGTTGATCTTGTGCGGTTTCCTGGTCAATTGATACCGAGTTCGACCAGGGCGATTTTTATGACTCATATTTC AGCAGCAGGGGAGAGTGACTCTGCAGAAAATGATTCCTGTGATTCTCCTCTAGAGCCAAACAGTCCTCTGTATGGTTTTGCAGAAAGAGCGGACCCTGAC AGTGCTGACAAAGATGAAAACCTTCAGTTCCATAAGAAATTAGAGGCATCTTCGAATGTGTCAGGCCCTTCATTGCGAAATATGATGTTGCGATCTGCCA CCTCTATTGACAGAAAATTGAGCTTATCACAAAGCGAACCGAATATTGCAACTACTTTTTGGAGACGTAGCCGGAAAAAGGTCATTGCTGAACAGCGGAC TGCTAGTTCAAGTCCAGAACATCCTTCATTGCAAGCGCGTGGTCGGTCCATGTTAAGTGGTGATAGACATTCAATTAGAGATTATGCTGATGATGTTGCT ACATCGAGCTACAGGTCAGAGGGTGCATCAACATCAGAAGCTCATAGAATGAGAAGAAGAAGTATTAGCATGACCCCAGAAATTGGTGATGACATCGTAA GGGCTGTACGTGCTATGAATGAAACTTTGAAGCAAAATCGTCTTTTGAGTGAACATGGCAATGATAGGTTGTTTACAAATAATTTAGATGACAAGGACAA TGGCTCAGATCTTCAAAAAAATGTATCAAATTTTGATCTTGATGGTCGTGAGGGAATATCTGGTGGAAGGTCTGCTTTATATACCCTTGAAAGTGACCAC ATAAATTCCCAGAAGGCAATTTCATTACCATCTTCCCCACATGAATATAGAAGTCAAACTTCCCAGAGCAGCAGATCTTCAGGCTTTGTAGCAAACGATC AATTGGTTACAACATGGAATAAAGTTCTTGAATCTCCCTTGTTCCATAGTAAACCCCTACTACCATTCCAAGAATGGAATATTGATTTCTCAGAATTAAC TGTTGGAGCTCGTGTTGGGATTGGGTTTTTTGGGGAGGTATTTCGTGGCGTATGGAATGGTACAGATGTCGCAATCAAGGTCTTTCTAGAGCAAGATCTA ACTGCTGAAAACATGGAGGACTTCTGCAATGAGATATCAATTCTTAGCCGTCTTCGACATCCTAATGTTATCTTATTTCTGGGTGCTTGCACAAGGCCTC CACGCTTATCAATGGTGACTGAATACATGGAGATGGGGTCCTTGTATTATTTGATCCACTTGAGTGGCCAGAAGAAGAAGCTTAGCTGGCGGAGGAAGCT AAAAATGTTGTGTGATATATGCAGGGGGTTGATGTGCATGCATCGAATGAAGATAGTTCATCGGGATCTTAAAAGTGCAAATTGCCTTGTGAATAAGCAT ATGACAGTTAAGATCTGTGATTTTGGACTCTCCAGAGTAATGACAGACACACCAATTAGGGACTCCTCGTCTGCTGGAACTCCTGAATGGATGGCACCGG AACTAATTCGTAATGAACCCTTCACTGAAAAATGTGATATTTTCAGCCTAGGGGTGATAATGTGGGAGCTCTGCACACTAAATAGACCATGGGAAGGTGT ACCACCAGAAAGGGTAGTTTATGCTGTCGCGAATGAGAGGTCCCGTTTGGAGATTCCAGAAGGTCCACTGGGCAAGCTAATATCGGATTGTTGGGCAGAT TCGCATTTACGGCCAAGCTGTGAAGAGATACTCTCTCGATTGCATGATTGCGAGTACGTGCTTTGCCGATAA
AA sequence Show only first row Show all	>Potri.002G214400.1 pacid=42777606 polypeptide=Potri.002G214400.1.p locus=Potri.002G214400 ID=Potri.002G214400.1.v4.1 annot-version=v4.1 MEETRDDSGPVEQGPSNSVWWGSDFIEKFDSVSLLSQEDTLSNKESPKSYEEDGLSSQTASQILWSTGMLSKQIPNGFYSVIPDKRLKELFVNIPTLDEL HSMGAEGFKADVILVDAKKDKKLSMLKQLIVALVKGLNSNPAAMIKKIAGLVSDFYKRPNVESPAKAALEEASHVLENRGVQLLGQIRQGSCCPRAILFK VLADSVGLESRLMVGLPNDGTVECVDSYKHMSVIVVLNSVELLVDLVRFPGQLIPSSTRAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFAERADPD SADKDENLQFHKKLEASSNVSGPSLRNMMLRSATSIDRKLSLSQSEPNIATTFWRRSRKKVIAEQRTASSSPEHPSLQARGRSMLSGDRHSIRDYADDVA TSSYRSEGASTSEAHRMRRRSISMTPEIGDDIVRAVRAMNETLKQNRLLSEHGNDRLFTNNLDDKDNGSDLQKNVSNFDLDGREGISGGRSALYTLESDH INSQKAISLPSSPHEYRSQTSQSSRSSGFVANDQLVTTWNKVLESPLFHSKPLLPFQEWNIDFSELTVGARVGIGFFGEVFRGVWNGTDVAIKVFLEQDL TAENMEDFCNEISILSRLRHPNVILFLGACTRPPRLSMVTEYMEMGSLYYLIHLSGQKKKLSWRRKLKMLCDICRGLMCMHRMKIVHRDLKSANCLVNKH MTVKICDFGLSRVMTDTPIRDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVANERSRLEIPEGPLGKLISDCWAD SHLRPSCEEILSRLHDCEYVLCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58640			Mitogen activated protein kina...		Potri.002G214400 [exp]	0	1
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.010G233600 [exp]	2.44	0.7600
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.011G154000 [exp]	16.52	0.7387
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.005G140200 [exp]	16.52	0.7211	SDG916,Pt-CLF.2
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.016G143966 [exp]	22.97	0.7493
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.014G014700 [exp]	41.83	0.7139	Pt-ECA3.3
AT1G13630			Tetratricopeptide repeat (TPR)...		Potri.010G137200 [exp]	63.07	0.6985
AT5G15070			Phosphoglycerate mutase-like f...		Potri.004G129900 [exp]	75.63	0.6934
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Potri.001G343500 [exp]	87.17	0.6218
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Potri.018G009400 [exp]	89.66	0.6361
AT3G03810		EDA30	embryo sac development arrest ...		Potri.019G036600 [exp]	94.95	0.6670

Compare expression of checked genes

Potri.002G214400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.