Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07650 355 / 1e-120 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT5G48250 341 / 4e-115 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT2G33500 117 / 4e-29 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT3G21880 114 / 3e-28 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT4G15250 111 / 2e-27 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT1G28050 110 / 3e-26 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT1G68190 104 / 8e-25 CO B-box zinc finger family protein (.1) AT2G47890 97 / 3e-23 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT5G24930 76 / 6e-15 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT2G24790 69 / 3e-13 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G170600 [exp] 598 / 0 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.017G039301 [exp] 187 / 9e-55 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1) Potri.007G121200 [exp] 186 / 2e-54 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1) Potri.001G061800 [exp] 115 / 4e-28 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 115 / 1e-27 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.008G125200 [exp] 101 / 4e-23 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.014G134601 [exp] 98 / 1e-22 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.002G208100 [exp] 98 / 2e-22 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.001G323500 [exp] 96 / 2e-21 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036419 [exp] 383 / 2e-131 AT5G48250 332 / 8e-112 B-box type zinc finger protein with CCT domain (.1) Lus10041096 [exp] 207 / 2e-63 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10015098 [exp] 149 / 7e-41 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10031584 [exp] 150 / 9e-41 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 107 / 4e-25 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10002578 [exp] 105 / 2e-24 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 101 / 2e-23 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10039695 [exp] 97 / 7e-22 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1) Lus10035257 [exp] 91 / 5e-20 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10034625 [exp] 82 / 1e-16 AT1G68190 182 / 3e-52 B-box zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.002G214500.1 pacid=42779839 polypeptide=Potri.002G214500.1.p locus=Potri.002G214500 ID=Potri.002G214500.1.v4.1 annot-version=v4.1 ATGGGTTATATTTGTGATTTTTGTGGGGAGCAAAGGTCCATGGTTTATTGCCGGTCAGATGCTGCGTGCTTATGCTTATCATGCGATCAAATTGTTCATT CTGCTAATGCCTTGTCCAAGCGTCACTCACGGACCCTCTTATGTGAAAGATGCAATTCACAACCTGCATTAGTTAGACGCGTGGAAGAAAGAATCTCTCT TTGTCAGAATTGTGATTGGATGGGCTATGGCTCCTCAACATCAGCTTCCACACATAAAAGGCAAACGATCAATTGTTACTTTGGCTGTCCATCAGTTTCT GAGCTTTCTTCAAAATGGCCATTCATTTTAGACTCCCCTTCTGGGGGTGGATCTACTTGTGAGCAGGAGTTGGGTTTAATGAGCATTGCTGAAAATAGCA CCAAAAACACCTGGGGTCCGACAGAGAATACTATTTGCCATAATGCATCTGGAATTGTTGGGGTTAATGACAGGTGTGAAATAGCTAAATCAGGTGTTTG GCATGAGGCTTCTTCAGTACCTGAATCAAGCTCTGTGCCAAAAAATTTAGACCAGCCAACCAGATCTCCAAATTCATCTTTGCCAAAGTTATACTGTCCT GGGACTAAGTGTCCTGCACGCTATGAAGATGCTGATCTTTATGAGGACTTCAATATGGCTGAAATGGATTTGAATCTTGAAAACTATGAAGAACTATTTG GTGTTACCCTCAATAATTCAGAAGAGCTTTTTGAGAATGGTGGCATTGATAGCTTATTTGGGACAAAGGACATGCCCATTGTTGATTCCAATTGTCAGGG TGCAGTTGCAGCTGAGGGGTCATCAGTTGGACTGGTCAACACAATACAGCCAACATGCAGCAATGCACCATCTACTGATTCTATGATTAGTAGTAAGACT GAACCAATCCTTTGTTTTACGGCAAAGCAAGGCCATTCCAGCCTATCATTTTCTGGCCTTACTGGAGAGAGTAATGCTGGAGATTATCAAGACTGTGGAG CATCTTCAATGCTTCTCATGGGAGAGCCTTCATGGTGTCCCCCGTGCCTTGAGAGTCCTTTACCTTCAGCTAACCGAAGTGATGCGGTAAAGCGTTACAT GGAAAAGAAAAAGACACGCAAGTTTGAAAAGAAAGTGAGGTATGCGTCTCGCAAAGCAAGGGCAGATGTAAGAAGGCGTGTGAAGGGTCGTTTTGTCAAA GCTGGTGATGCTTATGATTATGACCCACTGGGCCAAACAAGAAGTTTCTGA
AA sequence Show only first row Show all	>Potri.002G214500.1 pacid=42779839 polypeptide=Potri.002G214500.1.p locus=Potri.002G214500 ID=Potri.002G214500.1.v4.1 annot-version=v4.1 MGYICDFCGEQRSMVYCRSDAACLCLSCDQIVHSANALSKRHSRTLLCERCNSQPALVRRVEERISLCQNCDWMGYGSSTSASTHKRQTINCYFGCPSVS ELSSKWPFILDSPSGGGSTCEQELGLMSIAENSTKNTWGPTENTICHNASGIVGVNDRCEIAKSGVWHEASSVPESSSVPKNLDQPTRSPNSSLPKLYCP GTKCPARYEDADLYEDFNMAEMDLNLENYEELFGVTLNNSEELFENGGIDSLFGTKDMPIVDSNCQGAVAAEGSSVGLVNTIQPTCSNAPSTDSMISSKT EPILCFTAKQGHSSLSFSGLTGESNAGDYQDCGASSMLLMGEPSWCPPCLESPLPSANRSDAVKRYMEKKKTRKFEKKVRYASRKARADVRRRVKGRFVK AGDAYDYDPLGQTRSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.002G214500 [exp]	0	1
AT2G32970			unknown protein		Potri.014G158200 [exp]	3.16	0.7523
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Potri.019G087000 [exp]	5.29	0.7562
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Potri.003G073700 [exp]	7.07	0.7006
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Potri.008G178000 [exp]	8.36	0.6910
AT1G08760			Plant protein of unknown funct...		Potri.007G131600 [exp]	11.74	0.7267
AT2G37150			RING/U-box superfamily protein...		Potri.010G220700 [exp]	12.24	0.6767
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G031700 [exp]	12.44	0.6697	Pt-NHX2.2
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	14.86	0.6829
AT2G32970			unknown protein		Potri.002G224900 [exp]	14.96	0.7126
AT5G40740			unknown protein		Potri.001G337700 [exp]	17.32	0.6425

Compare expression of checked genes

Potri.002G214500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.