Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48110 1370 / 0 MED33B, REF4 reduced epidermal fluorescence 4 (.1) AT3G23590 1366 / 0 MED33A, RFR1 REF4-related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138400 [exp] 2095 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.008G201600 [exp] 1520 / 0 AT3G23590 1682 / 0.0 REF4-related 1 (.1) Potri.016G142500 [exp] 877 / 0 AT3G23590 871 / 0.0 REF4-related 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000663 [exp] 1628 / 0 AT2G48110 1484 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10029646 [exp] 1536 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10027998 [exp] 1501 / 0 AT2G48110 1370 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10034021 [exp] 1486 / 0 AT3G23590 1721 / 0.0 REF4-related 1 (.1) Lus10004434 [exp] 1479 / 0 AT3G23590 1722 / 0.0 REF4-related 1 (.1) Lus10041229 [exp] 1354 / 0 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10042689 [exp] 295 / 6e-87 AT2G48110 324 / 4e-98 reduced epidermal fluorescence 4 (.1) Lus10028033 [exp] 0 / 1 AT2G48120 91 / 6e-22 pale cress protein (PAC) (.1), pale cress protein (PAC) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G215600.1 pacid=42777972 polypeptide=Potri.002G215600.1.p locus=Potri.002G215600 ID=Potri.002G215600.1.v4.1 annot-version=v4.1 ATGGCGGCGGCGAGTTGTACTGTCTGGGACTCGGTACTTGAACTCACCAAGTCAGCTCAGGTCAAGAACTGCGACCCGCAACTATGGGCGATCCAACTCA GCTCCAATCTCAACTCTGCTGGCGTTGATTTGCCCTCAATGGAGCTGGCTCACCTATTAGTCTCTCATATCTGCTTCGATAATCACATGCCCATCACGTG GAAGTTCCTCGAGAAGGCCCTCTCCTTCAACCTCGTCCCTCCTTTGCTCGTCCTCGCTCTCCTCTCTACCAGGGTTGTTCCGAATCGACAGCTCCACCCG TCTGCATATAGGCTGTATATGGAACTCGTAAAGAGACACGCCTTTTCCTTTTCAGCTCTAATCGCTGCCCCAAATTATCAATTGATCATGAAATCAATAG ATGATGTTGCTCATCTTTCCCAAATATTTGGCGTGCAATTGTGTGAACCTGGCTTTCTTCTGGTTGAATTTGTCTTTTCAATCGTGTGGCAGTTACTTGA TGCTTCCTTGGATGATGAAGGGTTGCTGGAACTAGGTGCAGAAAAGAATTCTAGATGGCTACCCAGACAGGAGGGTATGGAAATAGATGGTCATGAGAAC TTTAGTGAGAAGAGAAATGAGCACCACGAGGGGTTGCACAAAGTAAATACTACAATGGCTATCGAGCTAATTGGAGAGTTTCTAAAAAACAAATTAACCT CGAGGCTACTTTACTTGGCACGTCAAAACATGCCTTCACAATGGGGAGGCTTCATCGAGCAATTGCAACTGCTTGTTGTGCATTCTGCAGCTTTGAGGAA CTCAAAACACATAACTCCAGATGCTTTTCTGCAGTTGACATCTGACACCCGAAGGGTTTTGTCTCGAGAGTGCAAAACAATATCACAACATGAGTTTCAT GCAGTCATGTTTTCAGGGTCTCTCAAATCTTCTGTTGGTCAATGCCACGGGGCAAGTCAGTCTGCAGTTTGGTTACCTATTGATCTATTTCTAGAAGACA CTATGGATGGGTCACAAGTGACGACAACTAGTGCTATAGAAAATCTTATCAGTTTGGTCAAAGCTCTGCAAGCAGTTAATCGCACCACTTGGCATGATAC TTTTCTAGGCTTATGGATTGCAGCTTTACGGCTAGTTCAAAGGGAAAGAAATCCTAGTGAGGGTCCAGTACCTCGCCTTGATACATGCTTGTCCATGTTA TTGTCTATTACAACCCTTGTAGTGGCTAATATTATTGAGGAAGAGGAAAGTGAATTGATTGATGAAACGCAACAGAGCCCTACCAATCAAAGAAAAGAAA AACAGGGGAAACGTCGAAAGGGTCTAATTACTTCCCTGCAGCTATTGGGTGACTATGAAGGGTTGTTGACTCCGCCTCAGCCTGTTAGCTCAGTCGCTAA TCAAGCTGCCGCAAAAGCTACAATGTTTATCTCAGGTCTCACTGTCAGTAATGGTTATAGCATGAGTATAAATGACATGCCAGTCAACTGTTCTGGAAAC TTGAGGCACCTGATTGTTGAGGCTTGTATTGCAAGAAATATGTTGGACACATCAGCATATTTGTGGCCAGGCTATGTGACTCTTGCCAACCAAGTACCTC GGAGTGTTCCCAGTCAAACACTTGGCTGGTTGTCATTGATGAACGGGTCACCTTTAACCCCCTCAATGATAAACATTTTGGTTTCAACTCCAGCTTCCAG CTTACCAGCGATCGAGAAAATATATGAGATTGCAGTCGATGGTTCTGATGATGAGAAGATATCTGCCGCTGCTATTCTTTGTGGAGCCTCTCTTGTTCGT GGTTGGAATATTCAGGAACATACAATTCTTTTCATTATAAAATTGCTGTCACCTCCAGTTCCTGCTGATTACTCTGGGAGTGAGAGTCACTTGATAAATT ATGCTCCGCTTTTAAATGTTCTTCTTGTTGGAATATCATCTGTGGATTGCGTGCAGATTTTATCCTTACATGGTTTGGTTCCACTACTTGCTGGTGCATT GATGCCCATCTGTGAGGCCTTTGGCTCTGCTGTTCCTGAGGTCTCATGGACTCTTCCAACAGGTGAAGAACTTTCTTGTCATGCGGTTTTTTCTAATGCC TTTACACTTCTTCTGAGATTGTGGAGATTTGAGCATCCACCTATTGATCATGTGATGGGAGACGTACCACCAGTGGGATCCCATCTAAGCCCTGAATACC TCTTGCTTGTAAGGAATTCCCTATTATCGTCCCTTGGAACTTCGACCAGGCGTCAACTCAGACGTAGGAGATTCTCAAAAATTTTGAGTCTGTCTGTAGA ACCCATATTCATGGATTCTTTCCCAAAGTTGAAACTATGGTACAGGCAGCATCTGGAATGCATTGCTTCTACCTTTTCCGGTCTTGTACATGGAACCCCT GTTCATCAGATTGTTGATGCACTCCTCAATTTAATGTTCAGAAGGATAAATAGAGGTGTTCAGCCTTCGACTTCTACGAACTCTGGAAGTAGTCTTTCAT CTGGCCCTGGTGCTGAAGATGCTCAAGCTAGGCTTAAAATATCTGCATGGGATATCTTAGAAGCAACTCCATTTGCCCTTGACGCTGCTCTGACAGCCTG TGCCCATGGAAGACTCTCTCCCCGTGAACTGGCTACAGGGCTTAAAGATCTCGCCGATTTTCTACCAGCATCTTTGGCCACCATTGTAAGCTACTTGTCA GCTGAAGTTACACGAGGCATATGGAAGCCAGCTTCTATGAATGGAACTGATTGGCCGAGCCCAGCTGTCAATTTATCCTCTGTTGAGCAGCAGATAAAGA AAATACTGGCTGCCACTGGTGTTGATGTCCCAAGCCTTTCTGTAGGGGGTACATCTCTGGCTACACTTCCTTTGCCATTAGCTGCCCTAGTAAGCCTCAC AATTACTTATAAATTGGACAAAATGTCTGAAAGGTTCCTCACCCTGGTTGGCCCAGCCTTGAATGCCCTTGCTGCTGGTTGCCCCTGGCCATGCATGCCC ATTATAGCCTCTCTATGGGCCCAGAAAGTTAAGCGTTGGAGTGACTACCTTGTGTTCTCTGCTTCGCGTACTGTGTTCCACCATAACAGCGATGCTGTAG TTCAGCTTCTGAAGAGCTGCTTCGCATCCACTCTTGGTTTGAGCCCCCCTCACCTTTCCAGCAATGGTGGTGTGGGTGCCCTTTTAGGTCACGGGTTTGG CTCCCACTTATCTGGTGGAATCTCTCCTGTTGCCCCGGGAATTCTTTACTTACGAGTGCATCGATCAGTCAGAGATGTCATGTTCATGACAGAAGAAATT CTCTCTCTTCTAATGCACTCTGTCAGAGATATTGCAAGTAGTGCGTGGACTAGAGGTGCAATGGAGAAATTGAAGAAAAGCAAATATGGGATGCGATATG GGAAAGTTTCTCTTGCTGCAGCAATGACACGTGTCAAGCTTGCAGCTTCACTTGGATCTTCTTTAGTGTGGATATCTGGCGGATTAAATTTGGTTCAATC TTTGATTAATGAAACTTTACCCTCCTGGTTTATATCAGTACATGGATTGGAGCAGGAAGGTGGAGAATCTGGAGGTCTGGTTGCAATGCTAAGGGGCTAT GCACTTGCTTACTTTGCGCTATTTTGTGGGACATTTGCATGGGGTGTGGACTCAGAAACAGCAGCATCAAAAAAACGGCCAACAGTGCTCAAAGCTCACT TAGAATTTCTGGCAAGTGCTCTAGAGGGGAAAATATCGCTTGGTTGTGATTGGGCTACTGCATGGGCATACGCATCTGGGTTTGTGTGCTTGATGGTGGC TTGCACACCGAAATGGGTGCCTGAGGTTGACGTGGATATATTGAAGAGGGTAAGCAAGGGGCTTAGGCAATGGAATGAAGAAGAACTGGCTGTCGCGTTA CTGGGACTAGGTGGAGTTGGTACAATGGGTGCAGCTGCTGAACTGATTATTGAAATTGGCTTGTAG
AA sequence Show only first row Show all	>Potri.002G215600.1 pacid=42777972 polypeptide=Potri.002G215600.1.p locus=Potri.002G215600 ID=Potri.002G215600.1.v4.1 annot-version=v4.1 MAAASCTVWDSVLELTKSAQVKNCDPQLWAIQLSSNLNSAGVDLPSMELAHLLVSHICFDNHMPITWKFLEKALSFNLVPPLLVLALLSTRVVPNRQLHP SAYRLYMELVKRHAFSFSALIAAPNYQLIMKSIDDVAHLSQIFGVQLCEPGFLLVEFVFSIVWQLLDASLDDEGLLELGAEKNSRWLPRQEGMEIDGHEN FSEKRNEHHEGLHKVNTTMAIELIGEFLKNKLTSRLLYLARQNMPSQWGGFIEQLQLLVVHSAALRNSKHITPDAFLQLTSDTRRVLSRECKTISQHEFH AVMFSGSLKSSVGQCHGASQSAVWLPIDLFLEDTMDGSQVTTTSAIENLISLVKALQAVNRTTWHDTFLGLWIAALRLVQRERNPSEGPVPRLDTCLSML LSITTLVVANIIEEEESELIDETQQSPTNQRKEKQGKRRKGLITSLQLLGDYEGLLTPPQPVSSVANQAAAKATMFISGLTVSNGYSMSINDMPVNCSGN LRHLIVEACIARNMLDTSAYLWPGYVTLANQVPRSVPSQTLGWLSLMNGSPLTPSMINILVSTPASSLPAIEKIYEIAVDGSDDEKISAAAILCGASLVR GWNIQEHTILFIIKLLSPPVPADYSGSESHLINYAPLLNVLLVGISSVDCVQILSLHGLVPLLAGALMPICEAFGSAVPEVSWTLPTGEELSCHAVFSNA FTLLLRLWRFEHPPIDHVMGDVPPVGSHLSPEYLLLVRNSLLSSLGTSTRRQLRRRRFSKILSLSVEPIFMDSFPKLKLWYRQHLECIASTFSGLVHGTP VHQIVDALLNLMFRRINRGVQPSTSTNSGSSLSSGPGAEDAQARLKISAWDILEATPFALDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYLS AEVTRGIWKPASMNGTDWPSPAVNLSSVEQQIKKILAATGVDVPSLSVGGTSLATLPLPLAALVSLTITYKLDKMSERFLTLVGPALNALAAGCPWPCMP IIASLWAQKVKRWSDYLVFSASRTVFHHNSDAVVQLLKSCFASTLGLSPPHLSSNGGVGALLGHGFGSHLSGGISPVAPGILYLRVHRSVRDVMFMTEEI LSLLMHSVRDIASSAWTRGAMEKLKKSKYGMRYGKVSLAAAMTRVKLAASLGSSLVWISGGLNLVQSLINETLPSWFISVHGLEQEGGESGGLVAMLRGY ALAYFALFCGTFAWGVDSETAASKKRPTVLKAHLEFLASALEGKISLGCDWATAWAYASGFVCLMVACTPKWVPEVDVDILKRVSKGLRQWNEEELAVAL LGLGGVGTMGAAAELIIEIGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Potri.002G215600 [exp]	0	1
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080600 [exp]	1.73	0.8267
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Potri.002G045900 [exp]	10.95	0.7385	HAG906,HAT1.6
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Potri.011G091200 [exp]	12.48	0.7440	MRP1.1
AT4G16440			ferredoxin hydrogenases (.1)		Potri.006G017000 [exp]	12.84	0.6544
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	14.89	0.7737
AT3G62310			RNA helicase family protein (....		Potri.014G117900 [exp]	20.19	0.7184
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	23.74	0.7735
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	24.57	0.7730
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Potri.015G050800 [exp]	25.80	0.7618
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Potri.013G022200 [exp]	29.79	0.7268

Compare expression of checked genes

Potri.002G215600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.