Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02920 290 / 2e-94 unknown protein AT1G03340 217 / 9e-67 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138200 [exp] 645 / 0 AT4G02920 276 / 4e-89 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027996 [exp] 352 / 6e-119 AT4G02920 254 / 4e-81 unknown protein Lus10008158 [exp] 344 / 1e-115 AT4G02920 248 / 1e-78 unknown protein Lus10029640 [exp] 307 / 3e-101 AT4G02920 250 / 3e-79 unknown protein Lus10042685 [exp] 305 / 2e-100 AT4G02920 233 / 7e-73 unknown protein Lus10008160 [exp] 287 / 4e-94 AT4G02920 209 / 3e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G215800.1 pacid=42778725 polypeptide=Potri.002G215800.1.p locus=Potri.002G215800 ID=Potri.002G215800.1.v4.1 annot-version=v4.1 ATGGTTAAGCTTTGTTCGATGGCTTCTCACGTGCATCCTCCTGGTCTTGCTATTGTTGTTCACGAAGATCAGAAAAGGGTTATCAAGGATTTTCAGCCCT ATTTACCTAGTTGGGGAGCAAGACAAGAGATAACAAGATCGAGTTCTCTTATGCTGAAATTACCTCAGCATGAACAACCATGGAGACCCATGAATAGGTT CTACCAGTCTAATCAGTTTGCCGAGATTGACTCAACGGTGAAAATGCCTATACTCATTGATGTGCAAGATGCTCGCCCAGACTCTGTCCTTTTTATCTTT GGGATAGTTGAAAAATGTACAAGACATGAGAAAATCTTGCAGTTTCTTATGTCCAAGTCAAATAAATTAGAAAGAGATGGATTAGATTTATCTTTTCTAT CTGAGTTGACTGGGCTACAAGCAGTGATGTTTGATGCACATCAGCAGTCACATTCTCCTCTTATTTACCCAAGTGACCAATTTGATTCCCTGAAATCTCC GGTGGACATTCTGGGAGATATGGCCCACAGTTCAAAACTTAGAGTTCTTCCAGATGGTCGGGTATTGCTAACTGGTAGTGGGATGGAGATGAAGGATATC CTCTCTACAGTTGCTGAATTTTACTTGTCTAGAAACTCAAACATCTGGAGAAAACAATCATTGCTTGTCCCCCATTTAAGCAGGCTTGATACAAGTAAAG TAGATTCTAACATTACGGGGTCTTCTTTCAAGGTCAGAGATGTGACAGCTGCTGCTTTGAAGAGTCCTGTGAAAATCAAGCCATCCCGAAAAAGGAAGAA TACTAGAAAGGGAGGTAGAGAGAGTGATCTCTACAAAAGGAACTACTTCAATGCATGTGAGAGCCTTCTATCTTTGATGATGGACAGGCGACATGAGAAA ACAGCAGTCTTGTCTCTGAGGAAATCTGGCCCTGAACTTCCTTTGCTTCTGAACCAGCTCTCTGTTGGCATTGCTGGGACAGGCCTTGCTCTTCTTTTTT CTGTCATCTGCAAGGTAGCTTGCAGGAGAGTACCCTTCAGTGCATGTAAACTGTTCTGCACAGGCATCGGTTTCGGGCTGGTCTGGCTCTCTTGGGCAGT GAATAAATTGAAGGACACGGTTGTTTACATTAGCAAGCATGCAAGCAAGGTGGGTCTGAAGGATAAGGAAATAATTAGGATTGTGGATAAAAGTTTTCAT GACATATACTTCAGAGCTGTAACAGTGATGGCAGTAGTAGTGCTGAGGCTTGTATGA
AA sequence Show only first row Show all	>Potri.002G215800.1 pacid=42778725 polypeptide=Potri.002G215800.1.p locus=Potri.002G215800 ID=Potri.002G215800.1.v4.1 annot-version=v4.1 MVKLCSMASHVHPPGLAIVVHEDQKRVIKDFQPYLPSWGARQEITRSSSLMLKLPQHEQPWRPMNRFYQSNQFAEIDSTVKMPILIDVQDARPDSVLFIF GIVEKCTRHEKILQFLMSKSNKLERDGLDLSFLSELTGLQAVMFDAHQQSHSPLIYPSDQFDSLKSPVDILGDMAHSSKLRVLPDGRVLLTGSGMEMKDI LSTVAEFYLSRNSNIWRKQSLLVPHLSRLDTSKVDSNITGSSFKVRDVTAAALKSPVKIKPSRKRKNTRKGGRESDLYKRNYFNACESLLSLMMDRRHEK TAVLSLRKSGPELPLLLNQLSVGIAGTGLALLFSVICKVACRRVPFSACKLFCTGIGFGLVWLSWAVNKLKDTVVYISKHASKVGLKDKEIIRIVDKSFH DIYFRAVTVMAVVVLRLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02920			unknown protein		Potri.002G215800 [exp]	0	1
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.008G172100 [exp]	6.92	0.9633	RNP1.2
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G012600 [exp]	8.00	0.9614
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Potri.014G141200 [exp]	12.24	0.9609
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Potri.005G254900 [exp]	12.72	0.9626
AT3G05410			Photosystem II reaction center...		Potri.005G027100 [exp]	14.07	0.9574
AT3G29185			Domain of unknown function (DU...		Potri.004G120900 [exp]	14.79	0.9620
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131300 [exp]	16.12	0.9578
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.006G005500 [exp]	16.73	0.9603
AT4G30825			Tetratricopeptide repeat (TPR)...		Potri.006G005100 [exp]	16.94	0.9454
AT2G35260			unknown protein		Potri.001G143400 [exp]	17.74	0.9531

Compare expression of checked genes

Potri.002G215800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.