Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54790 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT3G05180 427 / 3e-149 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 318 / 1e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 306 / 6e-102 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 299 / 4e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G26430 285 / 3e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 281 / 5e-92 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT5G14450 264 / 4e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G27950 256 / 3e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 256 / 3e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026300 [exp] 490 / 5e-174 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 489 / 1e-173 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G006500 [exp] 308 / 1e-102 AT1G09390 506 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G191100 [exp] 304 / 3e-101 AT1G09390 400 / 5e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 293 / 9e-97 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 288 / 2e-94 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G047900 [exp] 285 / 3e-93 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 282 / 3e-92 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 281 / 4e-92 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029638 [exp] 494 / 2e-175 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029980 [exp] 483 / 2e-171 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029639 [exp] 471 / 1e-166 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10008784 [exp] 281 / 5e-92 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10001522 [exp] 274 / 2e-89 AT1G09390 459 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032094 [exp] 267 / 2e-86 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 265 / 1e-85 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 264 / 3e-81 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10031438 [exp] 250 / 2e-78 AT1G09390 406 / 4e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012644 [exp] 241 / 2e-76 AT4G01130 494 / 1e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.002G216000.1 pacid=42780114 polypeptide=Potri.002G216000.1.p locus=Potri.002G216000 ID=Potri.002G216000.1.v4.1 annot-version=v4.1 ATGGCTCTTAAATTTTCTGCCATGGCCTTCATTTTCTCATTCCTGCCTACTGTTATTATCCCTTTGAAATTCAGCTATCCTGCCGTTTTCAATTTCGGTG ATTCAAATTCAGACACCGGTGGTCTAGTTGCAGGTCTTGCCTTTCCCGTTGGGCCTCCCAATGGACAAACCTACTTCCAGCAGCCACATGGGCGGTTCTG TGATGGCCGCTTGATCATCGACTTTTTAATGGATGCCATGGACCGACAGTTTCTGAATCCATATTTGGATTCTGTGGGAGCTCCTAACTTTCAGAAGGGG TGTAACTTTGCAACAGGAGGATCTACTATACTTCCTGCAAATGCTGCTTCGACATGTCCCTTTTCATTTGGAGTTCAGGTGGCTCAGTTTGTCCGGTTCA AGGACAGAGTTCTTCAATTGCTGGCCGAGGACAAGGAATTTCAGAAGTACCTCCCTCTAGAAGATTATTTCATGCAAGGCCTTTACATGTTCGACACGGG TCAGAATGATATCGACGGCGCGTTTTATTCGAAATCAGAGGACCAAGTGATAGCCTCTTTTCCAACCATTTTATCAGAGTTTGAAGCTGGAATTAAGAGA CTATATACCGCCGGCGCTCGGAATTTCTGGGTTCATAATACAGGACCTCTTGGCTGCTTACCTAGAATCATTGCAACATTTGGGAAAAACCCATCAAAGC TTGACCAGCCTGTATGTGTTGATTCACATAACCGTGCAGCTAATGTTTTCAACTCACAACTGCTTGATCTTTGCACAAAGTTTCAGGGGCAATTCCCAGA CGCTAATGTCACTTATGTGGACATTTTCTCAATAAAAATGAAACTCATTGCAGATTTTTCACAATATGGATTCAAACATTCGCTAGCAGCTTGCTGTGGA TATGGCGGGCCGCCATTGAATTTTGACAACAGAATTGCTTGCGGTCAAACCAAGGTTCTTAATGGCAGCAAAGTGACCGGGAGCCCTTGCAACGACACAG CTGAATATGTTAATTGGGATGGAAATCATTATACAGAAGCTGCAAATCGATATGTTTCGGAGCAAATATTGGCAGGAAATTACTCCAACCAATTGCCTCT CTCAATAAATACTCCTGCTCTTACAACATCCATGTTCGTCGACTCCAAACTATTATATTAA
AA sequence Show only first row Show all	>Potri.002G216000.1 pacid=42780114 polypeptide=Potri.002G216000.1.p locus=Potri.002G216000 ID=Potri.002G216000.1.v4.1 annot-version=v4.1 MALKFSAMAFIFSFLPTVIIPLKFSYPAVFNFGDSNSDTGGLVAGLAFPVGPPNGQTYFQQPHGRFCDGRLIIDFLMDAMDRQFLNPYLDSVGAPNFQKG CNFATGGSTILPANAASTCPFSFGVQVAQFVRFKDRVLQLLAEDKEFQKYLPLEDYFMQGLYMFDTGQNDIDGAFYSKSEDQVIASFPTILSEFEAGIKR LYTAGARNFWVHNTGPLGCLPRIIATFGKNPSKLDQPVCVDSHNRAANVFNSQLLDLCTKFQGQFPDANVTYVDIFSIKMKLIADFSQYGFKHSLAACCG YGGPPLNFDNRIACGQTKVLNGSKVTGSPCNDTAEYVNWDGNHYTEAANRYVSEQILAGNYSNQLPLSINTPALTTSMFVDSKLLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Potri.002G216000 [exp]	0	1
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.001G401300 [exp]	1.73	0.8773
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Potri.006G109900 [exp]	4.89	0.8680
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113132 [exp]	6.00	0.8635
AT2G33640			DHHC-type zinc finger family p...		Potri.002G006900 [exp]	13.03	0.8040
AT4G10550			Subtilase family protein (.1.2...		Potri.011G146300 [exp]	13.26	0.8133
AT1G23460			Pectin lyase-like superfamily ...		Potri.001G463000 [exp]	14.42	0.8307
AT5G43230			unknown protein		Potri.008G177500 [exp]	14.69	0.8318
AT3G27200			Cupredoxin superfamily protein...		Potri.001G332200 [exp]	15.49	0.8150
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Potri.003G059200 [exp]	15.49	0.8566
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.001G416800 [exp]	17.02	0.8603

Compare expression of checked genes

Potri.002G216000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.